Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1418X
(499 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|... 104 9e-24
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 31 0.13
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 28 0.68
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce... 27 1.2
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 27 2.1
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch... 27 2.1
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 27 2.1
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce... 26 3.6
SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase |Schizo... 26 3.6
SPBC8D2.05c |sfi1||spindle pole body protein Sfi1|Schizosaccharo... 26 3.6
SPCC338.07c |||NatA N-acetyltransferase complex subunit |Schizos... 25 4.8
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 6.3
SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase Byr1|Schizosacchar... 25 6.3
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 8.4
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom... 25 8.4
>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
Crm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1078
Score = 104 bits (249), Expect = 9e-24
Identities = 46/80 (57%), Positives = 60/80 (75%)
Frame = +1
Query: 13 VPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLL 192
VP+AR+ EVL+ + IV++L +T ++P + DAVF CTLEMI+KDF EYPEHR FF L
Sbjct: 793 VPDARDAEVLNLITTIVNQLSELLTDKIPLVLDAVFGCTLEMISKDFSEYPEHRAAFFQL 852
Query: 193 LQAVNTNCFKAFLSIPPAQF 252
L+A+N NCF A L+IP QF
Sbjct: 853 LRAINLNCFPALLNIPAPQF 872
Score = 75.4 bits (177), Expect = 5e-15
Identities = 33/95 (34%), Positives = 58/95 (61%), Gaps = 1/95 (1%)
Frame = +3
Query: 216 FQSIFEHTTSTIQLVLDSIIWAFKHTMRNVADTGLQILYRLLLNVEE-HPQAAQSFYRTY 392
F ++ +LV++SI+W+FKH R++ +TGL IL L+ N+ P + +F++TY
Sbjct: 861 FPALLNIPAPQFKLVINSIVWSFKHVSRDIQETGLNILLELINNMASMGPDVSNAFFQTY 920
Query: 393 LCDILEHVFSVVTDTSHGAGLTMHATILAHIFSLV 497
+L+ + V+TD+ H +G + + ILA +F LV
Sbjct: 921 YISLLQDILYVLTDSDHKSGFKLQSLILARLFYLV 955
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 30.7 bits (66), Expect = 0.13
Identities = 24/87 (27%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Frame = +3
Query: 237 TTSTIQLVLDSIIWAFKHT--MRNVADTGLQILYRLLLNVEEHPQAAQSFYRTYLCDILE 410
T ST+Q + I AFK R L +L ++L+NV ++ A LC ++E
Sbjct: 464 TLSTLQQFVGHIKDAFKKIGDCRQEQMRLLAVLEQVLINVAKNTPAFNLQSCFLLCSLVE 523
Query: 411 HVFSVVTDTSHGAGLTMHATILAHIFS 491
F V D SH + ++ + S
Sbjct: 524 QCFGVFNDFSHRFDFSFWISVAKRLIS 550
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 28.3 bits (60), Expect = 0.68
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = -3
Query: 227 NALKQFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTS 90
N +++ VL A ++K ++ S K L ISR+++K S +FG S
Sbjct: 994 NTIEERVL-ALQDRKRELIDSALGEKGLREISRLNTKELSFLFGMS 1038
>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 127 TLEMINKDFEEYPEHRTEFF-LLLQAVNTNCFKAFLSIPPAQFNWF 261
T+ N+DF+EY R+EF+ LL AV+ SIPP +F
Sbjct: 219 TVYHFNEDFKEYGASRSEFYPYLLAAVSDR--GEHHSIPPEDTPYF 262
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 26.6 bits (56), Expect = 2.1
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +1
Query: 28 EPEVLSCMAAIVHRLEGH-ITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQAV 204
E ++SC+ ++HR+ G IT K+FD E + F+ + +H T+ +
Sbjct: 98 EASLISCLRWLLHRIPGGVITWSTYKLFDEA-ETRANYPVRGFDIFMKHATK-----HSC 151
Query: 205 NTNCFKAFLSI 237
+ N K FL +
Sbjct: 152 HFNILKCFLKL 162
>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
3|||Manual
Length = 752
Score = 26.6 bits (56), Expect = 2.1
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 1/65 (1%)
Frame = -2
Query: 225 CFETVCIDRLQ**EKFCSMFWIL-FKVFVNHFQSTFKDCIKYFWYFRSYMSFKSVHDCCH 49
C+ET + E+ +F IL V N +F D + F M +V++C
Sbjct: 61 CYETARKSEIGLEERLKCLFAILDLLVIGNEINESFCDHLLPFLILEELMDIHTVNECAK 120
Query: 48 ARQYF 34
+YF
Sbjct: 121 LYEYF 125
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.6 bits (56), Expect = 2.1
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 34 EVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMI--NKDFEEYPEHRTEFFL-LLQAV 204
++L CM+ V R+EG TS KIF + + E+I + F+ Y L + + V
Sbjct: 1184 DILCCMSDFVSRVEGENTS---KIFTEISKFVREIISSSNSFKNYLLVCLRMLLEVAKNV 1240
Query: 205 NTNC 216
NT C
Sbjct: 1241 NTYC 1244
>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 25.8 bits (54), Expect = 3.6
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 269 HNLGI*TYNEECGRYRFTNIVPTVVKC*G 355
H +GI T E C TN +PTV++ G
Sbjct: 505 HGIGIFTAKEICENNTITNELPTVLRSVG 533
>SPAPYUG7.05 |||delta-1-pyrroline-5-carboxylate reductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 282
Score = 25.8 bits (54), Expect = 3.6
Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Frame = -3
Query: 233 LKNALK-QFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPSSLCT 60
+K ALK + +L+ + K S L S + +I R+ TAS I + VICP T
Sbjct: 99 MKEALKGKLILSILAGKTISSLQSMLDESTRVI--RIMPNTASRIRESMSVICPGPNAT 155
>SPBC8D2.05c |sfi1||spindle pole body protein
Sfi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 840
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/87 (16%), Positives = 43/87 (49%), Gaps = 1/87 (1%)
Frame = +2
Query: 17 LKLVSLKYCLAWQQSCTDLKDI*LLKYQKYLMQSLNVLWK*LTKTLKSIQNIEQNFS-YY 193
++ ++ +Y + W+ S D+K++ + + + + +W + ++QN ++
Sbjct: 532 IQKIAKQYLIKWRISLLDIKELSIRAEKLHTTNEIIGVWNQWVVSYNRKVGMQQNADLFF 591
Query: 194 CRRSIQTVSKHF*AYHQHNSIGFRFHN 274
R++++ V +H+ Y + ++ R N
Sbjct: 592 KRKTLRVVFEHW-RYLRETNMLLRLEN 617
>SPCC338.07c |||NatA N-acetyltransferase complex subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 729
Score = 25.4 bits (53), Expect = 4.8
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 174 NRIFLITAGGQYKLFQSIFEHTTSTIQLVLD 266
+R+ + +Y+L+ S E STI L+LD
Sbjct: 220 DRVAFLETRAEYELYLSKMEEAKSTIYLLLD 250
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.0 bits (52), Expect = 6.3
Identities = 13/50 (26%), Positives = 22/50 (44%)
Frame = -2
Query: 177 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSYMSFKSVHDCCHARQYFRL 28
C F I +F++ + S +F+YF + F + H +FRL
Sbjct: 88 CRRFHIA--IFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLHFNFFFRL 135
>SPAC1D4.13 |byr1|ste1, ste3|MAP kinase kinase
Byr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 340
Score = 25.0 bits (52), Expect = 6.3
Identities = 18/62 (29%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +3
Query: 198 GGQYKLFQSIFEHTTSTIQLVLDSIIWAFKHTMRNVADT-GLQILYRLLLNVEEHPQAAQ 374
GG+Y + I+ S I+L + W+F N+ D+ G+ L ++ EE P+
Sbjct: 233 GGKYTVKSDIWSLGISIIELATQELPWSFS----NIDDSIGILDLLHCIVQ-EEPPRLPS 287
Query: 375 SF 380
SF
Sbjct: 288 SF 289
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 24.6 bits (51), Expect = 8.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -1
Query: 100 LVLQKLYVLQVCARLLPCKTVLQAHELQEQQS 5
L+ KL +VC +L K LQ H++ QS
Sbjct: 1600 LLDSKLSFAEVCGQLQRLKETLQEHQMTSVQS 1631
>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1067
Score = 24.6 bits (51), Expect = 8.4
Identities = 8/26 (30%), Positives = 17/26 (65%)
Frame = +1
Query: 82 ITSEVPKIFDAVFECTLEMINKDFEE 159
+ V IF+AV +CT + + +++E+
Sbjct: 730 VPDTVKNIFEAVRKCTFDTLEEEYEK 755
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,270,660
Number of Sequences: 5004
Number of extensions: 48892
Number of successful extensions: 156
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 196153982
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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