Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1418X
(499 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0146 - 26267245-26267339,26267427-26267469,26267589-262677... 31 0.51
02_05_1072 - 33878676-33878747,33878926-33879949,33880684-338808... 30 0.90
01_01_0047 + 334809-334877,334966-335074,335159-335299,336337-33... 30 1.2
06_03_0529 - 21788132-21788395,21788414-21788511,21789458-217899... 29 2.1
10_05_0093 - 9108883-9109068,9109156-9109248,9109363-9109441,910... 29 2.7
01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786... 29 2.7
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288... 28 3.6
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049... 28 4.8
08_02_1283 - 25861355-25862755 27 6.3
05_05_0191 + 23127068-23127331,23127514-23127546 27 6.3
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 27 8.4
01_07_0205 - 41978437-41980599,41980805-41981215 27 8.4
>02_05_0146 -
26267245-26267339,26267427-26267469,26267589-26267725,
26268172-26268299,26268419-26268495,26268593-26268679,
26268817-26268933,26269115-26269165,26269383-26269497,
26270033-26270292
Length = 369
Score = 31.1 bits (67), Expect = 0.51
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -3
Query: 137 ISRVHSKTASNIFGTSEVICPSSLCTIAAMQDSTSGSRASGT 12
+S ++ N G +V+CP+ LCT AM +++ RA G+
Sbjct: 308 LSTPRTERCPNCSGAGKVMCPTCLCTGMAMANNSIDRRAWGS 349
>02_05_1072 -
33878676-33878747,33878926-33879949,33880684-33880804,
33881150-33881560,33881781-33881933,33882321-33882468
Length = 642
Score = 30.3 bits (65), Expect = 0.90
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Frame = -3
Query: 191 NKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPS-SLCTIAAMQDSTSGSRASG 15
++++++ SG+S+ LLI ++ A+ + GTS P+ S + +D+ G+ + G
Sbjct: 423 SQQSTIPLSGFSANGLLIHGSFNNTCANKLGGTSSSCAPARSSNDLMVARDTKGGASSFG 482
Query: 14 TAVL 3
A+L
Sbjct: 483 GAML 486
>01_01_0047 +
334809-334877,334966-335074,335159-335299,336337-336498,
336577-336734,337180-337310,337385-337472,337587-337690,
338346-338444,339060-339116,339262-339337,339519-339602,
339969-340010,340128-340198,341516-341564,342370-342441,
343149-343286,343393-343473,344166-344353,344591-345188,
345274-345342,346729-346854,347048-347175,347986-348142,
348342-348388,348472-348535,348691-348765,349292-349414,
349797-349982,351179-351303,351390-351459,351974-352101,
352585-352726,353065-353163,353239-353285,353598-353652,
353758-353967,354686-354757,354836-354905,355231-355414,
355521-355644,355732-355863,356252-356317,356805-356852,
357572-357676,357728-357865,358097-358399,358482-358594,
359082-359148,359236-359310,359395-359517,359610-359618,
360156-360320,360401-360502,361545-361696,361794-361995,
362079-362126,362215-362298,362613-362657,363302-363385,
363890-363970,364044-364133,364217-364279,364824-364841,
365238-365378,365494-365550,366091-366185,366275-366383,
367067-367156,367308-367387,367480-367558,367742-367903,
368005-368136,368335-368469,368553-368618,369317-369457,
369575-369648,369685-369910
Length = 2905
Score = 29.9 bits (64), Expect = 1.2
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 2/84 (2%)
Frame = +3
Query: 213 LFQSIFEHTTSTIQLVLDSIIWAFKHTMRNVADTGLQILYRL--LLNVEEHPQAAQSFYR 386
L +FE +S +Q++LD + A KH + V ++ + L L +V + +A S ++
Sbjct: 637 LLSRVFEEKSSFLQVMLDYVTNAIKHIVSVVMKEHAELSHGLTNLGSVFDTTGSALSSFK 696
Query: 387 TYLCDILEHVFSVVTDTSHGAGLT 458
+++ L ++ V TS G+T
Sbjct: 697 SFMHSPLFSLWRVNNKTSSVLGVT 720
>06_03_0529 -
21788132-21788395,21788414-21788511,21789458-21789953,
21790033-21790134,21790218-21790270,21790354-21790414,
21790491-21790640,21791298-21791350,21794125-21794152
Length = 434
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -2
Query: 177 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSYMSFKSV 64
C++++ ++ + F S F +YFW + +FK V
Sbjct: 189 CNLYYGFVRILIKSFTSEFPHVERYFWTMVNQPNFKKV 226
>10_05_0093 -
9108883-9109068,9109156-9109248,9109363-9109441,
9109529-9109639,9109715-9109857,9110050-9110522,
9110568-9111075,9111241-9111810,9111883-9112119,
9112196-9112465
Length = 889
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +1
Query: 10 AVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYP 165
+VP+ EP+V ++ +E I + D V E T+E +KD E P
Sbjct: 508 SVPDVEEPDVALPDVQVLSSIEPTIHEDPNPTRDPVEETTVEATDKDKSEVP 559
>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
28679221-28679265,28679523-28679594,28679721-28679759,
28679966-28680061,28680492-28680566,28681717-28681764,
28681888-28681971,28682141-28682341,28682394-28682561,
28683232-28683372,28683470-28683517,28683845-28684087,
28684184-28684297,28685134-28685163,28685361-28685951,
28686033-28686620,28686744-28686863,28687764-28687938,
28688397-28688562,28688653-28688755,28689227-28689319,
28690759-28690918,28691754-28691872
Length = 1275
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/51 (27%), Positives = 20/51 (39%)
Frame = +1
Query: 97 PKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQAVNTNCFKAFLSIPPAQ 249
P + D V E ++NK + P+ F L F L +PP Q
Sbjct: 1156 PALVDFVMEILSRLVNKQIWKMPKLWVGFLKLAYQTQPRSFDVILQLPPPQ 1206
>12_02_0981 -
25027336-25027596,25028017-25028361,25028681-25028827,
25028906-25029970
Length = 605
Score = 28.3 bits (60), Expect = 3.6
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Frame = +3
Query: 255 LVLDSIIWAFKHTMRNVADT---GLQILYRLLLNVEEHPQAAQSFYRTYLCDILEHVFSV 425
L +++ W+ H +R A+ G ++L L + EHP+ Q+ + HVF
Sbjct: 174 LRVETTRWSLDHLVRWCAELQRGGARVLMLANLAIPEHPELPQAILNCGASHLGLHVFFF 233
Query: 426 VTDTSHGAGL 455
+ H A L
Sbjct: 234 TVEAYHIAAL 243
>03_04_0020 -
16504322-16504654,16504758-16504785,16504937-16504989,
16505377-16505463,16505636-16505704,16506071-16506145,
16507040-16507210,16507693-16507793,16508062-16508139,
16508492-16508648,16508737-16509006,16509369-16509485,
16510250-16510339,16510417-16510629,16510742-16510891,
16511929-16512342
Length = 801
Score = 27.9 bits (59), Expect = 4.8
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Frame = -1
Query: 475 RIVACIVSPAPCDVSVTTLKTCSKMSQR--*VL*KLCAACGCSSTF 344
+ V C C + + TCSKM+ R V+ +LC A C + F
Sbjct: 745 KAVGCCSRLTDCCCCMCFINTCSKMNDRCAIVMVQLCGALSCLACF 790
>08_02_1283 - 25861355-25862755
Length = 466
Score = 27.5 bits (58), Expect = 6.3
Identities = 19/47 (40%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 339 LLNVEEHPQAAQSFYRTYLCDILEHVFSVV--TDTSHGAGLTMHATI 473
+LNV P A SFY+ L D+L HVFS + + S+G + AT+
Sbjct: 390 ILNVIP-PAADGSFYKG-LIDVLRHVFSELYEINVSNGENFVLVATV 434
>05_05_0191 + 23127068-23127331,23127514-23127546
Length = 98
Score = 27.5 bits (58), Expect = 6.3
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 19 EAREPEVLSCMAAIVHRLEGHITSEVPKIFDA 114
EA+E EVL CM R H E ++++A
Sbjct: 7 EAKEMEVLECMGQAARRPGSHGKDEAQRVWEA 38
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -2
Query: 177 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSYMSFKSV 64
C+++ ++ +F S F +YFW + +FK V
Sbjct: 735 CNLYMGFARIMTKNFTSEFPHVERYFWTMVNQPNFKKV 772
>01_07_0205 - 41978437-41980599,41980805-41981215
Length = 857
Score = 27.1 bits (57), Expect = 8.4
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -2
Query: 282 MPRLWNLKPIELCWWYAQKCFETVC 208
+P +W LK +EL KC E +C
Sbjct: 748 LPAIWCLKTLELLCLDQMKCIEYIC 772
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,347,154
Number of Sequences: 37544
Number of extensions: 291032
Number of successful extensions: 671
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1047416480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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