Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1418X
         (499 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)             126   8e-30
SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)     27   6.5  

>SB_49725| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score =  126 bits (305), Expect = 8e-30
 Identities = 57/80 (71%), Positives = 66/80 (82%)
 Frame = +1

Query: 13  VPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLL 192
           VP AREPEVLS MA  +++LE ++T  VP+IFDAVFECTL MINKDFEE+PEHRT FFLL
Sbjct: 471 VPGAREPEVLSTMATFINKLEANVTENVPQIFDAVFECTLNMINKDFEEFPEHRTNFFLL 530

Query: 193 LQAVNTNCFKAFLSIPPAQF 252
           LQAV  +CF+A L IPP QF
Sbjct: 531 LQAVVQHCFQALLKIPPEQF 550



 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 26/56 (46%), Positives = 36/56 (64%)
 Frame = +3

Query: 183 FLITAGGQYKLFQSIFEHTTSTIQLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV 350
           FL+        FQ++ +      +LVLDSI+WAFKHTMRNVADTGL +   +L ++
Sbjct: 528 FLLLQAVVQHCFQALLKIPPEQFKLVLDSIVWAFKHTMRNVADTGLTMHATILAHM 583



 Score = 34.3 bits (75), Expect = 0.057
 Identities = 18/29 (62%), Positives = 20/29 (68%)
 Frame = +3

Query: 408 EHVFSVVTDTSHGAGLTMHATILAHIFSL 494
           +H    V DT    GLTMHATILAH+FSL
Sbjct: 562 KHTMRNVADT----GLTMHATILAHMFSL 586


>SB_35444| Best HMM Match : Hist_deacetyl (HMM E-Value=1.90577e-43)
          Length = 636

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = -1

Query: 139 SFPEYIQRLHQIFLVLQKLYVLQVCARLLPCKTVL 35
           S PE+  RL  I+  LQ+  V+ +C R+ P K  L
Sbjct: 315 SHPEHPGRLQSIWARLQETGVVNMCDRVRPRKATL 349


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,046,610
Number of Sequences: 59808
Number of extensions: 364898
Number of successful extensions: 1019
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 885
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1075029208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)