Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1418X
(499 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 88 3e-18
AC006617-2|AAF39765.2| 442|Caenorhabditis elegans Hypothetical ... 30 1.1
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ... 29 1.9
Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical p... 28 3.3
U61949-2|AAB03152.1| 884|Caenorhabditis elegans Puromycin-sensi... 28 3.3
U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensi... 28 3.3
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine re... 27 7.6
AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical ... 27 10.0
>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta family
protein 4,isoform a protein.
Length = 1080
Score = 88.2 bits (209), Expect = 3e-18
Identities = 37/77 (48%), Positives = 55/77 (71%)
Frame = +1
Query: 13 VPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLL 192
VP+AREP+VLS ++ +V +L + +VP I AVF+C+++MINKD E +PEHRT FF L
Sbjct: 802 VPQAREPKVLSLLSILVTQLGSLLCPQVPSILSAVFQCSIDMINKDMEAFPEHRTNFFEL 861
Query: 193 LQAVNTNCFKAFLSIPP 243
+ ++ CF F+ +PP
Sbjct: 862 VLSLVQECFPVFMEMPP 878
Score = 83.4 bits (197), Expect = 8e-17
Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Frame = +3
Query: 216 FQSIFEHTTSTIQLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV-EEHPQAAQSFYRTY 392
F E + V+D+++WAF+HTMRNVA+ GL IL LL V E+ + AQ FY+ Y
Sbjct: 870 FPVFMEMPPEDLGTVIDAVVWAFQHTMRNVAEIGLDILKELLARVSEQDDKIAQPFYKRY 929
Query: 393 LCDILEHVFSVVTDTS--HGAGLTMHATILAHIF 488
D+L+HV +V D+S H AGLT +A +L +F
Sbjct: 930 YIDLLKHVLAVACDSSQVHVAGLTYYAEVLCALF 963
>AC006617-2|AAF39765.2| 442|Caenorhabditis elegans Hypothetical
protein C39B5.5 protein.
Length = 442
Score = 29.9 bits (64), Expect = 1.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = -2
Query: 393 GRFCKNSVLPVDVPQHLTTVGTIF 322
G +C N L D+P HLT G F
Sbjct: 412 GLYCSNRQLDTDIPDHLTYFGVFF 435
>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
protein C44E4.7 protein.
Length = 1145
Score = 29.1 bits (62), Expect = 1.9
Identities = 21/69 (30%), Positives = 32/69 (46%)
Frame = +2
Query: 11 LFLKLVSLKYCLAWQQSCTDLKDI*LLKYQKYLMQSLNVLWK*LTKTLKSIQNIEQNFSY 190
LF KL+ KY Q+ + + K KYL SLN+ + T+ I + + FS
Sbjct: 614 LFDKLLEQKY----QEGLLQDTKLIIQKTDKYLSSSLNLFNEYNTQEPSKIYPVNEIFSL 669
Query: 191 YCRRSIQTV 217
+CR + V
Sbjct: 670 FCRYGSENV 678
>Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical
protein F54B8.12 protein.
Length = 279
Score = 28.3 bits (60), Expect = 3.3
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = -2
Query: 141 NHFQSTFKDCIKYFWYFRSYMSFKSVHDCCHARQYFRLTSFRNSSPL 1
++FQ TF +C + +W F + F S+ + + RL ++ SS L
Sbjct: 158 DNFQCTFNECYQKYWEFHEQVVF-SLIETLSLLLFIRLYIWKRSSHL 203
>U61949-2|AAB03152.1| 884|Caenorhabditis elegans
Puromycin-sensitive aminopeptidaseprotein 1, isoform a
protein.
Length = 884
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 364 CGCSSTFNNSRYNICKPVSATFLIVCLNAQIMES 263
C C+ + R + +P+ T + LNA+++ES
Sbjct: 837 CNCNVLSDTDRQTLARPIGQTVEAIRLNARLLES 870
>U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensitive
aminopeptidaseprotein 1, isoform b protein.
Length = 948
Score = 28.3 bits (60), Expect = 3.3
Identities = 10/34 (29%), Positives = 19/34 (55%)
Frame = -1
Query: 364 CGCSSTFNNSRYNICKPVSATFLIVCLNAQIMES 263
C C+ + R + +P+ T + LNA+++ES
Sbjct: 901 CNCNVLSDTDRQTLARPIGQTVEAIRLNARLLES 934
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
protein F43C1.1 protein.
Length = 1036
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -1
Query: 124 IQRLHQIFLVLQKLYVLQVCARLLPCKTVLQAHELQ 17
++ L + L +L L C LLPC VL+AH Q
Sbjct: 557 LELLEDLNLSSNRLTRLADCLALLPCLQVLRAHSNQ 592
>AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine
receptor, class w protein144 protein.
Length = 357
Score = 27.1 bits (57), Expect = 7.6
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -2
Query: 177 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSY 82
CSMF+ + +V+ + F C++ WY Y
Sbjct: 81 CSMFYKMKQVYGRSIEYIFDPCLQSKWYLDVY 112
>AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical
protein Y97E10AR.4 protein.
Length = 547
Score = 26.6 bits (56), Expect = 10.0
Identities = 12/38 (31%), Positives = 19/38 (50%)
Frame = +2
Query: 110 MQSLNVLWK*LTKTLKSIQNIEQNFSYYCRRSIQTVSK 223
M L +LWK K + S + IE + +YC + + K
Sbjct: 223 MPCLYLLWKDYRKKVSSPKRIETIYKHYCEKMYLNLHK 260
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,574
Number of Sequences: 27780
Number of extensions: 288192
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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