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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1418X
         (499 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f...    88   3e-18
AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical ...    30   1.1  
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    29   1.9  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    28   3.3  
U61949-2|AAB03152.1|  884|Caenorhabditis elegans Puromycin-sensi...    28   3.3  
U61949-1|AAY44009.1|  948|Caenorhabditis elegans Puromycin-sensi...    28   3.3  
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr...    27   7.6  
AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine re...    27   7.6  
AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical ...    27   10.0 

>U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta family
            protein 4,isoform a protein.
          Length = 1080

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 37/77 (48%), Positives = 55/77 (71%)
 Frame = +1

Query: 13   VPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLL 192
            VP+AREP+VLS ++ +V +L   +  +VP I  AVF+C+++MINKD E +PEHRT FF L
Sbjct: 802  VPQAREPKVLSLLSILVTQLGSLLCPQVPSILSAVFQCSIDMINKDMEAFPEHRTNFFEL 861

Query: 193  LQAVNTNCFKAFLSIPP 243
            + ++   CF  F+ +PP
Sbjct: 862  VLSLVQECFPVFMEMPP 878



 Score = 83.4 bits (197), Expect = 8e-17
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
 Frame = +3

Query: 216  FQSIFEHTTSTIQLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV-EEHPQAAQSFYRTY 392
            F    E     +  V+D+++WAF+HTMRNVA+ GL IL  LL  V E+  + AQ FY+ Y
Sbjct: 870  FPVFMEMPPEDLGTVIDAVVWAFQHTMRNVAEIGLDILKELLARVSEQDDKIAQPFYKRY 929

Query: 393  LCDILEHVFSVVTDTS--HGAGLTMHATILAHIF 488
              D+L+HV +V  D+S  H AGLT +A +L  +F
Sbjct: 930  YIDLLKHVLAVACDSSQVHVAGLTYYAEVLCALF 963


>AC006617-2|AAF39765.2|  442|Caenorhabditis elegans Hypothetical
           protein C39B5.5 protein.
          Length = 442

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = -2

Query: 393 GRFCKNSVLPVDVPQHLTTVGTIF 322
           G +C N  L  D+P HLT  G  F
Sbjct: 412 GLYCSNRQLDTDIPDHLTYFGVFF 435


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 21/69 (30%), Positives = 32/69 (46%)
 Frame = +2

Query: 11  LFLKLVSLKYCLAWQQSCTDLKDI*LLKYQKYLMQSLNVLWK*LTKTLKSIQNIEQNFSY 190
           LF KL+  KY    Q+       + + K  KYL  SLN+  +  T+    I  + + FS 
Sbjct: 614 LFDKLLEQKY----QEGLLQDTKLIIQKTDKYLSSSLNLFNEYNTQEPSKIYPVNEIFSL 669

Query: 191 YCRRSIQTV 217
           +CR   + V
Sbjct: 670 FCRYGSENV 678


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -2

Query: 141 NHFQSTFKDCIKYFWYFRSYMSFKSVHDCCHARQYFRLTSFRNSSPL 1
           ++FQ TF +C + +W F   + F S+ +      + RL  ++ SS L
Sbjct: 158 DNFQCTFNECYQKYWEFHEQVVF-SLIETLSLLLFIRLYIWKRSSHL 203


>U61949-2|AAB03152.1|  884|Caenorhabditis elegans
           Puromycin-sensitive aminopeptidaseprotein 1, isoform a
           protein.
          Length = 884

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 364 CGCSSTFNNSRYNICKPVSATFLIVCLNAQIMES 263
           C C+   +  R  + +P+  T   + LNA+++ES
Sbjct: 837 CNCNVLSDTDRQTLARPIGQTVEAIRLNARLLES 870


>U61949-1|AAY44009.1|  948|Caenorhabditis elegans Puromycin-sensitive
            aminopeptidaseprotein 1, isoform b protein.
          Length = 948

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -1

Query: 364  CGCSSTFNNSRYNICKPVSATFLIVCLNAQIMES 263
            C C+   +  R  + +P+  T   + LNA+++ES
Sbjct: 901  CNCNVLSDTDRQTLARPIGQTVEAIRLNARLLES 934


>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
           protein F43C1.1 protein.
          Length = 1036

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 124 IQRLHQIFLVLQKLYVLQVCARLLPCKTVLQAHELQ 17
           ++ L  + L   +L  L  C  LLPC  VL+AH  Q
Sbjct: 557 LELLEDLNLSSNRLTRLADCLALLPCLQVLRAHSNQ 592


>AF068717-4|AAC17764.2|  357|Caenorhabditis elegans Serpentine
           receptor, class w protein144 protein.
          Length = 357

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 177 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSY 82
           CSMF+ + +V+    +  F  C++  WY   Y
Sbjct: 81  CSMFYKMKQVYGRSIEYIFDPCLQSKWYLDVY 112


>AC024880-6|AAF60912.1|  547|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.4 protein.
          Length = 547

 Score = 26.6 bits (56), Expect = 10.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 110 MQSLNVLWK*LTKTLKSIQNIEQNFSYYCRRSIQTVSK 223
           M  L +LWK   K + S + IE  + +YC +    + K
Sbjct: 223 MPCLYLLWKDYRKKVSSPKRIETIYKHYCEKMYLNLHK 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,869,574
Number of Sequences: 27780
Number of extensions: 288192
Number of successful extensions: 793
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 945973702
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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