BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1418X (499 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta f... 88 3e-18 AC006617-2|AAF39765.2| 442|Caenorhabditis elegans Hypothetical ... 30 1.1 AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ... 29 1.9 Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical p... 28 3.3 U61949-2|AAB03152.1| 884|Caenorhabditis elegans Puromycin-sensi... 28 3.3 U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensi... 28 3.3 Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 27 7.6 AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine re... 27 7.6 AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical ... 27 10.0 >U64855-2|AAB04981.2| 1080|Caenorhabditis elegans Importin beta family protein 4,isoform a protein. Length = 1080 Score = 88.2 bits (209), Expect = 3e-18 Identities = 37/77 (48%), Positives = 55/77 (71%) Frame = +1 Query: 13 VPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLL 192 VP+AREP+VLS ++ +V +L + +VP I AVF+C+++MINKD E +PEHRT FF L Sbjct: 802 VPQAREPKVLSLLSILVTQLGSLLCPQVPSILSAVFQCSIDMINKDMEAFPEHRTNFFEL 861 Query: 193 LQAVNTNCFKAFLSIPP 243 + ++ CF F+ +PP Sbjct: 862 VLSLVQECFPVFMEMPP 878 Score = 83.4 bits (197), Expect = 8e-17 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 3/94 (3%) Frame = +3 Query: 216 FQSIFEHTTSTIQLVLDSIIWAFKHTMRNVADTGLQILYRLLLNV-EEHPQAAQSFYRTY 392 F E + V+D+++WAF+HTMRNVA+ GL IL LL V E+ + AQ FY+ Y Sbjct: 870 FPVFMEMPPEDLGTVIDAVVWAFQHTMRNVAEIGLDILKELLARVSEQDDKIAQPFYKRY 929 Query: 393 LCDILEHVFSVVTDTS--HGAGLTMHATILAHIF 488 D+L+HV +V D+S H AGLT +A +L +F Sbjct: 930 YIDLLKHVLAVACDSSQVHVAGLTYYAEVLCALF 963 >AC006617-2|AAF39765.2| 442|Caenorhabditis elegans Hypothetical protein C39B5.5 protein. Length = 442 Score = 29.9 bits (64), Expect = 1.1 Identities = 11/24 (45%), Positives = 13/24 (54%) Frame = -2 Query: 393 GRFCKNSVLPVDVPQHLTTVGTIF 322 G +C N L D+P HLT G F Sbjct: 412 GLYCSNRQLDTDIPDHLTYFGVFF 435 >AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical protein C44E4.7 protein. Length = 1145 Score = 29.1 bits (62), Expect = 1.9 Identities = 21/69 (30%), Positives = 32/69 (46%) Frame = +2 Query: 11 LFLKLVSLKYCLAWQQSCTDLKDI*LLKYQKYLMQSLNVLWK*LTKTLKSIQNIEQNFSY 190 LF KL+ KY Q+ + + K KYL SLN+ + T+ I + + FS Sbjct: 614 LFDKLLEQKY----QEGLLQDTKLIIQKTDKYLSSSLNLFNEYNTQEPSKIYPVNEIFSL 669 Query: 191 YCRRSIQTV 217 +CR + V Sbjct: 670 FCRYGSENV 678 >Z93383-14|CAB07631.2| 279|Caenorhabditis elegans Hypothetical protein F54B8.12 protein. Length = 279 Score = 28.3 bits (60), Expect = 3.3 Identities = 14/47 (29%), Positives = 25/47 (53%) Frame = -2 Query: 141 NHFQSTFKDCIKYFWYFRSYMSFKSVHDCCHARQYFRLTSFRNSSPL 1 ++FQ TF +C + +W F + F S+ + + RL ++ SS L Sbjct: 158 DNFQCTFNECYQKYWEFHEQVVF-SLIETLSLLLFIRLYIWKRSSHL 203 >U61949-2|AAB03152.1| 884|Caenorhabditis elegans Puromycin-sensitive aminopeptidaseprotein 1, isoform a protein. Length = 884 Score = 28.3 bits (60), Expect = 3.3 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = -1 Query: 364 CGCSSTFNNSRYNICKPVSATFLIVCLNAQIMES 263 C C+ + R + +P+ T + LNA+++ES Sbjct: 837 CNCNVLSDTDRQTLARPIGQTVEAIRLNARLLES 870 >U61949-1|AAY44009.1| 948|Caenorhabditis elegans Puromycin-sensitive aminopeptidaseprotein 1, isoform b protein. Length = 948 Score = 28.3 bits (60), Expect = 3.3 Identities = 10/34 (29%), Positives = 19/34 (55%) Frame = -1 Query: 364 CGCSSTFNNSRYNICKPVSATFLIVCLNAQIMES 263 C C+ + R + +P+ T + LNA+++ES Sbjct: 901 CNCNVLSDTDRQTLARPIGQTVEAIRLNARLLES 934 >Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical protein F43C1.1 protein. Length = 1036 Score = 27.1 bits (57), Expect = 7.6 Identities = 14/36 (38%), Positives = 19/36 (52%) Frame = -1 Query: 124 IQRLHQIFLVLQKLYVLQVCARLLPCKTVLQAHELQ 17 ++ L + L +L L C LLPC VL+AH Q Sbjct: 557 LELLEDLNLSSNRLTRLADCLALLPCLQVLRAHSNQ 592 >AF068717-4|AAC17764.2| 357|Caenorhabditis elegans Serpentine receptor, class w protein144 protein. Length = 357 Score = 27.1 bits (57), Expect = 7.6 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -2 Query: 177 CSMFWILFKVFVNHFQSTFKDCIKYFWYFRSY 82 CSMF+ + +V+ + F C++ WY Y Sbjct: 81 CSMFYKMKQVYGRSIEYIFDPCLQSKWYLDVY 112 >AC024880-6|AAF60912.1| 547|Caenorhabditis elegans Hypothetical protein Y97E10AR.4 protein. Length = 547 Score = 26.6 bits (56), Expect = 10.0 Identities = 12/38 (31%), Positives = 19/38 (50%) Frame = +2 Query: 110 MQSLNVLWK*LTKTLKSIQNIEQNFSYYCRRSIQTVSK 223 M L +LWK K + S + IE + +YC + + K Sbjct: 223 MPCLYLLWKDYRKKVSSPKRIETIYKHYCEKMYLNLHK 260 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 12,869,574 Number of Sequences: 27780 Number of extensions: 288192 Number of successful extensions: 793 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 770 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 792 length of database: 12,740,198 effective HSP length: 76 effective length of database: 10,628,918 effective search space used: 945973702 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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