Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1418X
         (499 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   1.8  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    22   3.1  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   3.1  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.4  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 263 RFHNLGI*TYNEECGRY 313
           R  N+GI ++  ECG+Y
Sbjct: 362 RLVNIGIISWGAECGKY 378


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/34 (23%), Positives = 17/34 (50%)
 Frame = -1

Query: 127 YIQRLHQIFLVLQKLYVLQVCARLLPCKTVLQAH 26
           ++ +LHQ+    +K+Y   +C      K  ++ H
Sbjct: 245 HVLKLHQVAHYGEKVYKCTLCHETFGSKKTMELH 278


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
          finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 3.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -1

Query: 91 QKLYVLQVCARLLPCKTVLQAH 26
          +KL+  Q+C ++L  K  L+ H
Sbjct: 3  KKLFTCQLCGKVLCSKASLKRH 24


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = -3

Query: 314 GICHIPHCMFKCPDY 270
           G+C  P C   C DY
Sbjct: 281 GVCKWPGCEVICEDY 295


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 9/42 (21%), Positives = 18/42 (42%)
 Frame = +1

Query: 34  EVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEE 159
           + ++C   +  R +G I  +    FD   +    +  + FEE
Sbjct: 242 QTITCPIKVSWRADGQIMVDYEDEFDEFGDSKCSLCQRRFEE 283


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,242
Number of Sequences: 438
Number of extensions: 3569
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13618701
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)