Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1418X
(499 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03110.1 68416.m00307 exportin 1, putative strong similarity ... 96 1e-20
At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to Ex... 95 2e-20
At5g01400.1 68418.m00053 expressed protein contains low similari... 31 0.43
At4g39440.1 68417.m05581 expressed protein ; expression support... 31 0.57
At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger) fa... 29 1.7
At3g03960.1 68416.m00415 chaperonin, putative similar to SWISS-P... 28 3.0
At2g32990.1 68415.m04043 glycosyl hydrolase family 9 protein sim... 28 3.0
At5g61670.2 68418.m07738 expressed protein 28 4.0
At5g61670.1 68418.m07737 expressed protein 28 4.0
At1g75430.1 68414.m08762 homeodomain-containing protein contains... 28 4.0
At5g50140.1 68418.m06210 ankyrin repeat family protein contains ... 27 5.3
At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to autop... 27 7.0
At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to autop... 27 7.0
At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase fa... 27 7.0
At1g16070.1 68414.m01928 tubby family protein similar to Tubby r... 27 7.0
At5g39940.1 68418.m04843 expressed protein 27 9.3
At5g38570.1 68418.m04664 F-box family protein contains F-box dom... 27 9.3
At4g31170.2 68417.m04425 protein kinase family protein contains ... 27 9.3
At4g31170.1 68417.m04424 protein kinase family protein contains ... 27 9.3
At3g58200.1 68416.m06489 meprin and TRAF homology domain-contain... 27 9.3
At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase sm... 27 9.3
>At3g03110.1 68416.m00307 exportin 1, putative strong similarity to
Exportin1 (XPO1) protein [Arabidopsis thaliana]
GI:7671510; contains Pfam profile PF03810: Importin-beta
N-terminal domain
Length = 1076
Score = 95.9 bits (228), Expect = 1e-20
Identities = 43/79 (54%), Positives = 59/79 (74%)
Frame = +1
Query: 13 VPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLL 192
VP+ARE EVLS A I+++ + + EVP IF+AVF+CTLEMI K+FE+YPEHR +FF L
Sbjct: 796 VPDARESEVLSLFATIINKYKVVMRDEVPLIFEAVFQCTLEMITKNFEDYPEHRLKFFSL 855
Query: 193 LQAVNTNCFKAFLSIPPAQ 249
L+A+ T CF+A + + Q
Sbjct: 856 LRAIATFCFRALIQLSSEQ 874
Score = 93.9 bits (223), Expect = 5e-20
Identities = 40/94 (42%), Positives = 64/94 (68%)
Frame = +3
Query: 216 FQSIFEHTTSTIQLVLDSIIWAFKHTMRNVADTGLQILYRLLLNVEEHPQAAQSFYRTYL 395
F+++ + ++ ++LV+DS+IWAF+HT RN+A+TGL +L +L N ++ FY+TY
Sbjct: 864 FRALIQLSSEQLKLVMDSVIWAFRHTERNIAETGLNLLLEMLKNFQK-SDFCNKFYQTYF 922
Query: 396 CDILEHVFSVVTDTSHGAGLTMHATILAHIFSLV 497
I + VF+V+TDT H G +H +L H+FSLV
Sbjct: 923 LQIEQEVFAVLTDTFHKPGFKLHVLVLQHLFSLV 956
>At5g17020.1 68418.m01995 exportin1 (XPO1) nearly identical to
Exportin1 (XPO1) protein [Arabidopsis thaliana]
GI:7671510
Length = 1075
Score = 95.5 bits (227), Expect = 2e-20
Identities = 42/79 (53%), Positives = 58/79 (73%)
Frame = +1
Query: 13 VPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLL 192
VP+ARE EVLS A I+++ + + +VP IF+AVF+CTLEMI K+FE+YPEHR +FF L
Sbjct: 795 VPDARESEVLSLFATIINKYKATMLDDVPHIFEAVFQCTLEMITKNFEDYPEHRLKFFSL 854
Query: 193 LQAVNTNCFKAFLSIPPAQ 249
L+A+ T CF A + + Q
Sbjct: 855 LRAIATFCFPALIKLSSPQ 873
Score = 86.6 bits (205), Expect = 8e-18
Identities = 37/93 (39%), Positives = 61/93 (65%)
Frame = +3
Query: 216 FQSIFEHTTSTIQLVLDSIIWAFKHTMRNVADTGLQILYRLLLNVEEHPQAAQSFYRTYL 395
F ++ + ++ ++LV+DSIIWAF+HT RN+A+TGL +L +L N ++ + FYR+Y
Sbjct: 863 FPALIKLSSPQLKLVMDSIIWAFRHTERNIAETGLNLLLEMLKNFQQ-SEFCNQFYRSYF 921
Query: 396 CDILEHVFSVVTDTSHGAGLTMHATILAHIFSL 494
I + +F+V+TDT H G +H +L +F L
Sbjct: 922 MQIEQEIFAVLTDTFHKPGFKLHVLVLQQLFCL 954
>At5g01400.1 68418.m00053 expressed protein contains low similarity to
symplekin SP:Q92797 from [Homo sapiens]
Length = 1467
Score = 31.1 bits (67), Expect = 0.43
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +1
Query: 97 PKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQAVNTNCFKAFLSIPPAQ 249
P + D + E +++K +YP+ F Q +K L +PP Q
Sbjct: 1154 PALSDFILEILSRLVSKQIWKYPKLWVGFLKCTQTTQPQSYKVLLQLPPLQ 1204
>At4g39440.1 68417.m05581 expressed protein ; expression supported
by MPSS
Length = 443
Score = 30.7 bits (66), Expect = 0.57
Identities = 17/48 (35%), Positives = 29/48 (60%)
Frame = -1
Query: 157 LQSLC*SFPEYIQRLHQIFLVLQKLYVLQVCARLLPCKTVLQAHELQE 14
LQ L FP+ ++RL Q+++ + + VL V LL C T+LQ +++
Sbjct: 376 LQMLPCWFPKAVRRLVQLYIQV-SISVLSVVCALLSCTTLLQLSGIED 422
>At5g03180.1 68418.m00266 zinc finger (C3HC4-type RING finger)
family protein various predicted proteins, Arabidopsis
thaliana ; contains Pfam profile PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 462
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = +3
Query: 369 AQSFYRTYLCDILEHVFSVVTDTSHGAGLTMHAT 470
AQ FYR D+ + V +V T G GLTM T
Sbjct: 403 AQLFYRVVRFDVKQPVMCIVLATMIGFGLTMTGT 436
>At3g03960.1 68416.m00415 chaperonin, putative similar to
SWISS-PROT:P42932- T-complex protein 1, theta subunit
(TCP-1-theta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 549
Score = 28.3 bits (60), Expect = 3.0
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = -3
Query: 140 IISRVHSKTASNIFGTSEVICPSSLCTIAAMQ 45
+ISR+ + AS FG E+IC SL T A +Q
Sbjct: 162 VISRMRAAVASKQFGQEEIIC--SLVTDACIQ 191
>At2g32990.1 68415.m04043 glycosyl hydrolase family 9 protein
similar to endo-beta-1,4-glucanase GI:4972236 from
[Fragaria x ananassa]
Length = 525
Score = 28.3 bits (60), Expect = 3.0
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Frame = +3
Query: 261 LDSIIWAFKHTMRNVADTGLQILYRLLLNVEEHPQAAQSF--YRT----YLCDIL 407
L + WA +V G+Q+L +LL E+H Q ++ Y++ YLC IL
Sbjct: 278 LGGLSWAMSEFSWDVKFAGVQLLASMLLKEEKHKQHSKVLQQYKSKADHYLCSIL 332
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 137 ISRVHSKTASNIFGTSEVICPSSLCTIAAM 48
+S ++ SN G +V+CP+ LCT AM
Sbjct: 266 LSPPKTERCSNCSGAGKVMCPTCLCTGMAM 295
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -3
Query: 137 ISRVHSKTASNIFGTSEVICPSSLCTIAAM 48
+S ++ SN G +V+CP+ LCT AM
Sbjct: 266 LSPPKTERCSNCSGAGKVMCPTCLCTGMAM 295
>At1g75430.1 68414.m08762 homeodomain-containing protein contains
'Homeobox' domain signature, Prosite:PS00027
Length = 297
Score = 27.9 bits (59), Expect = 4.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 140 LTKTLKSIQNIEQNFSYYCRRSIQTVS 220
+TK L +Q +E+ F YC + Q +S
Sbjct: 89 ITKLLSLLQQVEERFEQYCNQLEQVIS 115
>At5g50140.1 68418.m06210 ankyrin repeat family protein contains
ankyrin repeat domains, Pfam:PF00023
Length = 535
Score = 27.5 bits (58), Expect = 5.3
Identities = 16/52 (30%), Positives = 30/52 (57%)
Frame = +1
Query: 7 TAVPEAREPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTLEMINKDFEEY 162
T + A LS ++ IVH ++ +T++ K F+AV +++NKD E++
Sbjct: 182 TVLHAAASVGFLSLVSYIVHEIKIEVTTQNDKGFEAV-----DLLNKDDEDF 228
>At3g59950.2 68416.m06690 autophagy 4b (APG4b) identical to
autophagy 4b [Arabidopsis thaliana]
gi|19912145|dbj|BAB88384
Length = 471
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -3
Query: 233 LKNALKQFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPSSLCTIA 54
+K +FV + CS+ S SS + L+ S SN+ S+V+ SS +
Sbjct: 1 MKAICDRFVPSKCSSSSTSEK-RDISSPTSLVSDSASSDNKSNLTLCSDVVASSSPVSQL 59
Query: 53 AMQDSTSG 30
+ STSG
Sbjct: 60 CREASTSG 67
>At3g59950.1 68416.m06691 autophagy 4b (APG4b) identical to
autophagy 4b [Arabidopsis thaliana]
gi|19912145|dbj|BAB88384
Length = 477
Score = 27.1 bits (57), Expect = 7.0
Identities = 20/68 (29%), Positives = 31/68 (45%)
Frame = -3
Query: 233 LKNALKQFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVICPSSLCTIA 54
+K +FV + CS+ S SS + L+ S SN+ S+V+ SS +
Sbjct: 1 MKAICDRFVPSKCSSSSTSEK-RDISSPTSLVSDSASSDNKSNLTLCSDVVASSSPVSQL 59
Query: 53 AMQDSTSG 30
+ STSG
Sbjct: 60 CREASTSG 67
>At2g43900.1 68415.m05457 endonuclease/exonuclease/phosphatase
family protein belongs to Pfam:PF03372:
Endonuclease/Exonuclease/phosphatase family; contains 3
WD-40 repeats (PF00400);similar to Type II
inositol-1,4,5-trisphosphate 5-phosphatase EC 3.1.3.56
(5PTASE) (INPP5B) (SP:P32019) [Homo sapiens]
Length = 1305
Score = 27.1 bits (57), Expect = 7.0
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 64 HRLEGHITSEVPKIFDAVFECTLEMINKDFEEYP 165
HR H ++PKI + V C + + D E YP
Sbjct: 48 HRQRQHSLDDIPKITEIVSGCGISGDSSDDEFYP 81
>At1g16070.1 68414.m01928 tubby family protein similar to Tubby
related protein 1 (Tubby-like protein 1)
(Swiss-Prot:Q9Z273) [Mus musculus]; low similarity to
Tubby related protein 1 (Tubby-like protein 1)
(Swiss-Prot:O0029) {Homo sapiens}; similar to
phosphodiesterase (GI:467578) [Mus musculus]; contains
Pfam profile PF01167: Tub family
Length = 397
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = -3
Query: 230 KNALKQFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASN-IFGTSEVICPSSLCTI 57
+ ALKQ L AC K + V S + K+ + HS + F SE SS T+
Sbjct: 80 RTALKQSSLQACMQKNSEVDKSSFGMKTWTSVDSEHSSSLKVWEFSDSEAAPASSWSTL 138
>At5g39940.1 68418.m04843 expressed protein
Length = 480
Score = 26.6 bits (56), Expect = 9.3
Identities = 20/85 (23%), Positives = 37/85 (43%)
Frame = -3
Query: 260 NQLNCAGGMLKNALKQFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTSEVI 81
N L+ +LK+ F +T K+ + +G S + + + SK N+F EV+
Sbjct: 378 NSLSSISDLLKHCT--FQVTGKGQYKDEFVTAGGVPLSEVSLKTMESKLVPNLFFAGEVL 435
Query: 80 CPSSLCTIAAMQDSTSGSRASGTAV 6
+ Q++ SG +GT +
Sbjct: 436 NVDGVTGGFNFQNAWSGGYIAGTNI 460
>At5g38570.1 68418.m04664 F-box family protein contains F-box domain
Pfam:PF00646
Length = 379
Score = 26.6 bits (56), Expect = 9.3
Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Frame = -3
Query: 431 SDYTEDMLQNVTKVGSVKTLCCLWMFLNI*QQSVQYL*TGICHIPHCMFKCPDYGI*NQL 252
S++ + ++ ++T V + T+CCL +L ++ + H+ CM CP +
Sbjct: 219 SNHLKTLIGSITSVKHL-TICCLEDYL----YGDGFIFNHLEHLKLCM--CPF----DSS 267
Query: 251 NCAGGMLKNALKQFVLTACSNKKNSVLCSGYSSKSL-LIISRVHSKTASNIFG 96
N G +LK + VL K+N ++C S L ++S + S FG
Sbjct: 268 NLLGQLLKGSPNLQVLDIFEMKRNDIVCWNQPSSVLECLLSSLKILNWSAYFG 320
>At4g31170.2 68417.m04425 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 412
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 28 EPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTL 132
+PEV C A IV+ LE T + + A F C +
Sbjct: 371 DPEVRPCFAEIVNLLEAAETEIMTNVRKARFRCCM 405
>At4g31170.1 68417.m04424 protein kinase family protein contains
eukaryotic protein kinase domain, INTERPRO:IPR000719
Length = 412
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 28 EPEVLSCMAAIVHRLEGHITSEVPKIFDAVFECTL 132
+PEV C A IV+ LE T + + A F C +
Sbjct: 371 DPEVRPCFAEIVNLLEAAETEIMTNVRKARFRCCM 405
>At3g58200.1 68416.m06489 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein similar to
ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 319
Score = 26.6 bits (56), Expect = 9.3
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +1
Query: 115 VFECTLEMINKDFEEYPEHRTEFFLLLQAVNTNCFKAFLSI 237
V +E +++ FE YPE + F Q + T C LS+
Sbjct: 184 VLPSQVEFVSRVFERYPEIASIFQAKKQHLRTACMYVLLSL 224
>At3g27060.1 68416.m03385 ribonucleoside-diphosphate reductase small
chain, putative / ribonucleotide reductase, putative
similar to ribonucleotide reductase R2 [Nicotiana
tabacum] GI:1044912; contains Pfam profile PF00268:
Ribonucleotide reductase, small chain
Length = 332
Score = 26.6 bits (56), Expect = 9.3
Identities = 10/37 (27%), Positives = 20/37 (54%)
Frame = -2
Query: 270 WNLKPIELCWWYAQKCFETVCIDRLQ**EKFCSMFWI 160
W +K I+ +A++ C++ + FCS+FW+
Sbjct: 147 WAMKWIDGSQTFAERIIAFACVEGIFFSGSFCSIFWL 183
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,727,067
Number of Sequences: 28952
Number of extensions: 246973
Number of successful extensions: 589
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 587
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 878448512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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