Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1416
         (808 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7X8Z7 Cluster: OSJNBa0085I10.19 protein; n=5; Magnolio...    37   0.52 
UniRef50_Q9BRL6 Cluster: Splicing factor, arginine/serine-rich 2...    37   0.69 
UniRef50_Q5CPT6 Cluster: Putative Sec14d; n=1; Cryptosporidium p...    35   2.8  
UniRef50_Q5AFF8 Cluster: Potential tRNA-specific adenosine deami...    34   3.7  
UniRef50_Q6LYK0 Cluster: Putative uncharacterized protein; n=3; ...    34   3.7  
UniRef50_Q5CQ28 Cluster: Large protein with possible RING domain...    34   4.8  
UniRef50_Q54C16 Cluster: Saposin B domain-containing protein; n=...    34   4.8  
UniRef50_Q23FP7 Cluster: Putative uncharacterized protein; n=1; ...    33   6.4  
UniRef50_A5Z397 Cluster: Putative uncharacterized protein; n=1; ...    33   8.5  

>UniRef50_Q7X8Z7 Cluster: OSJNBa0085I10.19 protein; n=5;
           Magnoliophyta|Rep: OSJNBa0085I10.19 protein - Oryza
           sativa subsp. japonica (Rice)
          Length = 904

 Score = 37.1 bits (82), Expect = 0.52
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +2

Query: 59  PVEPYKAVPVEENDNAENQNILNSNRFELINDASEQDENMANEVREICYMATKQ 220
           P +P K VPV END++      +S+  E+ ND SE D++ + E  E   + +KQ
Sbjct: 198 PEKPQKNVPVSENDSSSG----DSSDEEMANDQSESDDSSSEEASEELKIESKQ 247


>UniRef50_Q9BRL6 Cluster: Splicing factor, arginine/serine-rich 2B;
           n=41; Eumetazoa|Rep: Splicing factor,
           arginine/serine-rich 2B - Homo sapiens (Human)
          Length = 282

 Score = 36.7 bits (81), Expect = 0.69
 Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
 Frame = -3

Query: 236 YIRNSFVLSPCSRSRALRSPCSRLVQRHR*SAQSDW-SSGYSG--FPRYHSPR 87
           Y R+ +  SP SRSR  RSP SR   R      S + SSGYS   + RYHS R
Sbjct: 155 YSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSR 207


>UniRef50_Q5CPT6 Cluster: Putative Sec14d; n=1; Cryptosporidium
           parvum Iowa II|Rep: Putative Sec14d - Cryptosporidium
           parvum Iowa II
          Length = 1063

 Score = 34.7 bits (76), Expect = 2.8
 Identities = 15/37 (40%), Positives = 21/37 (56%)
 Frame = +2

Query: 74  KAVPVEENDNAENQNILNSNRFELINDASEQDENMAN 184
           KA+P + NDN  + N  N N  + IN  +  D N+AN
Sbjct: 559 KALPEDHNDNVSSNNGNNDNDSDNINSGNSNDHNIAN 595


>UniRef50_Q5AFF8 Cluster: Potential tRNA-specific adenosine
           deaminase; n=2; Saccharomycetales|Rep: Potential
           tRNA-specific adenosine deaminase - Candida albicans
           (Yeast)
          Length = 347

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -3

Query: 422 HRDCKRNRFNEASKCYTTSLILMEDDGFAS*RSLNLLVEDRILFHCIIL-VWIVLNRGIN 246
           HR C R RF+  S  +   L+  + DG+   +S   L     L H + L V  VLN G+ 
Sbjct: 217 HR-CFRTRFDLPSVVHPLQLLTYDCDGYEFVKSEEKLPSQLSLLHIVPLNVTQVLNNGVK 275

Query: 245 NKIYIRN 225
           N  +I+N
Sbjct: 276 NGSFIKN 282


>UniRef50_Q6LYK0 Cluster: Putative uncharacterized protein; n=3;
           Methanococcus maripaludis|Rep: Putative uncharacterized
           protein - Methanococcus maripaludis
          Length = 528

 Score = 34.3 bits (75), Expect = 3.7
 Identities = 19/51 (37%), Positives = 28/51 (54%)
 Frame = +2

Query: 80  VPVEENDNAENQNILNSNRFELINDASEQDENMANEVREICYMATKQNCFV 232
           +PV     AEN+ I  +N FE+ ND   +D + A +V E  Y  +K N F+
Sbjct: 174 LPVTAVYQAENKLIFGNNAFEMFNDIINEDNDFAIDVYE--YNNSKLNYFI 222


>UniRef50_Q5CQ28 Cluster: Large protein with possible RING domain;
           n=2; Cryptosporidium|Rep: Large protein with possible
           RING domain - Cryptosporidium parvum Iowa II
          Length = 1364

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 3/33 (9%)
 Frame = +2

Query: 95  NDNA---ENQNILNSNRFELINDASEQDENMAN 184
           NDN+   EN N+L +N   L+ND  E DE+M N
Sbjct: 705 NDNSTYKENNNLLGNNETALVNDLGEIDESMVN 737


>UniRef50_Q54C16 Cluster: Saposin B domain-containing protein; n=1;
           Dictyostelium discoideum AX4|Rep: Saposin B
           domain-containing protein - Dictyostelium discoideum AX4
          Length = 637

 Score = 33.9 bits (74), Expect = 4.8
 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
 Frame = +2

Query: 92  ENDNAENQNILNSNRFELINDASEQDENMANEVRE-ICYMATKQNCFVCKF 241
           +N+N  N N  N+N+ E+IN+ ++ + N+ +E  E + Y      C +CKF
Sbjct: 34  DNNNYNNNN--NNNKNEIINNNNKNNNNLNDEYFEKLGYDTNGTKCDICKF 82


>UniRef50_Q23FP7 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 1856

 Score = 33.5 bits (73), Expect = 6.4
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +2

Query: 62  VEPYKAVPVEENDNAENQNILNSNRFELINDASEQDE 172
           V+P K +  +E    ENQ+ L+SNR  L N   +Q+E
Sbjct: 816 VKPLKKIKTQEISEGENQSKLSSNRSSLSNQKKQQNE 852


>UniRef50_A5Z397 Cluster: Putative uncharacterized protein; n=1;
           Eubacterium ventriosum ATCC 27560|Rep: Putative
           uncharacterized protein - Eubacterium ventriosum ATCC
           27560
          Length = 443

 Score = 33.1 bits (72), Expect = 8.5
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +2

Query: 71  YKAVPVEENDNAENQNI-LNSNRFELINDASEQDENMANEVREICY 205
           Y+A+P+E  D  +  NI  NS       D  EQDEN+ + V+E+ Y
Sbjct: 55  YRAIPIETEDGNDGGNIAFNSVEVREEPDEKEQDENI-SAVKELTY 99


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 700,199,486
Number of Sequences: 1657284
Number of extensions: 13566285
Number of successful extensions: 44971
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37488
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44350
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 69554636255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)