Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1416
         (808 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp...    28   1.8  
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M...    27   3.1  
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   4.1  
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch...    25   9.6  

>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
           Spt6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1365

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +2

Query: 56  YPVEPYKAVPVEENDNAENQNILNSNRFELINDASEQ---DENMANEVRE 196
           YP E  +   V++N+N E ++ +  +     ND+SE+   DE    +VRE
Sbjct: 21  YPAENGEGTNVDDNNNEEEKDGIPLDNDNDENDSSEESATDEEAERQVRE 70


>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 468

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 92  ENDNAEN-QNILNSNRFELINDASEQDENMANEVREICYM 208
           E DN  N Q  + S++  LIN    QDE +  +V+E+  M
Sbjct: 58  ELDNIRNAQAAIRSSKQTLINKVKAQDELLKKKVKELTAM 97


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 86   VEENDNAENQNILNSNRFELINDASEQDENMANEVRE 196
            +++ND +   N+L +  FEL   +S  D N   + +E
Sbjct: 1243 LQKNDPSAYSNMLEATHFELSTTSSTSDSNEIEKTQE 1279


>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
           Atf1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 18/75 (24%), Positives = 34/75 (45%)
 Frame = -3

Query: 608 LDRNRDVIIEEDRRCKTI*PKGGAMITVQLN*SFYQNSSKIYTVNLNVMRHYDTSKRI*T 429
           L+RNR   ++  +R K        +  +Q    FY N ++I +  ++ +R    S +   
Sbjct: 479 LERNRQAALKCRQRKKQW------LSNLQAKVEFYGNENEILSAQVSALREEIVSLKTLL 532

Query: 428 *THRDCKRNRFNEAS 384
             H+DC   + N A+
Sbjct: 533 IAHKDCPVAKSNSAA 547


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,023,829
Number of Sequences: 5004
Number of extensions: 60236
Number of successful extensions: 178
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)