Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1416
         (808 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1121 - 31041629-31041793,31041891-31042022,31042255-310424...    37   0.016
12_01_1020 - 10407397-10407507,10407927-10407979,10408005-104081...    28   7.6  

>04_04_1121 -
           31041629-31041793,31041891-31042022,31042255-31042425,
           31042521-31042622,31042703-31042807,31043115-31043286,
           31043916-31043980,31044179-31044502,31044729-31044846,
           31044928-31045011,31045472-31045603,31045714-31046570,
           31046735-31046849,31047371-31047481,31047763-31047824
          Length = 904

 Score = 37.1 bits (82), Expect = 0.016
 Identities = 20/54 (37%), Positives = 31/54 (57%)
 Frame = +2

Query: 59  PVEPYKAVPVEENDNAENQNILNSNRFELINDASEQDENMANEVREICYMATKQ 220
           P +P K VPV END++      +S+  E+ ND SE D++ + E  E   + +KQ
Sbjct: 198 PEKPQKNVPVSENDSSSG----DSSDEEMANDQSESDDSSSEEASEELKIESKQ 247


>12_01_1020 -
           10407397-10407507,10407927-10407979,10408005-10408122,
           10408405-10408407
          Length = 94

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +3

Query: 15  MMKNLSWCLSLISSIQWSRTKRCPSRRMITRKTRIS*TPIALS*STMPLNK 167
           +MK+LS C  L    QWS       RR+I    + S  P+ LS  + PL +
Sbjct: 5   VMKHLSNCTCLQPYRQWSSKPSLILRRLIDMVVQSSVLPLPLSPHSPPLRQ 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,273,945
Number of Sequences: 37544
Number of extensions: 346157
Number of successful extensions: 833
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 833
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)