Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1416
         (808 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.4  
SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)               28   7.7  
SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)                   28   7.7  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  

>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 74  KAVPVEENDNA-ENQNIL-NSNRFELINDASEQDENMANEVREICYMATK 217
           K  PV+EN    E+ N   N N F   N++  +D+N   E REIC M  K
Sbjct: 67  KDFPVKENQGTIESLNTKENGNTFAADNES--KDKNKGYEEREICRMKAK 114


>SB_19190| Best HMM Match : Peptidase_A17 (HMM E-Value=0)
          Length = 1829

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 20   EEPLLVPFSDFFYPVEPYKAVPVEENDNAENQNILNSNRF 139
            E+P+L P  D    V   +A   EEN ++  Q +  SN+F
Sbjct: 1643 EQPVLRPTKDEAKQVNSIQATEHEENQDSGFQGVTTSNKF 1682


>SB_45596| Best HMM Match : rve (HMM E-Value=1.8e-07)
          Length = 882

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 20  EEPLLVPFSDFFYPVEPYKAVPVEENDNAENQNILNSNRF 139
           E+P+L P  D    V   +A   EEN ++  Q +  SN+F
Sbjct: 471 EQPVLRPTKDEAKQVNSIQATEHEENQDSGVQGVTTSNKF 510


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 28.3 bits (60), Expect = 7.7
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  YKAVPVEENDNAENQNILNSNRFE 142
           YKAVP+ EN+  E  N  N +R E
Sbjct: 845 YKAVPINENNQQEKANDSNKDREE 868


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,115,076
Number of Sequences: 59808
Number of extensions: 453465
Number of successful extensions: 1129
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1117
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2239700683
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)