Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1416
(808 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF031166-1|AAK54351.1| 272|Homo sapiens SRp46 splicing factor p... 37 0.099
AF031165-1|AAK54350.1| 282|Homo sapiens SRp46 splicing factor p... 37 0.099
BC057783-1|AAH57783.1| 275|Homo sapiens SFRS2B protein protein. 36 0.17
BX928748-1|CAH74051.1| 5635|Homo sapiens protein ( Human DNA seq... 31 4.9
AL391824-1|CAI17865.1| 5635|Homo sapiens protein ( Human DNA seq... 31 4.9
AL135797-1|CAI17871.1| 5635|Homo sapiens protein ( Human DNA seq... 31 4.9
AL135796-1|CAI17854.1| 5635|Homo sapiens protein ( Human DNA seq... 31 4.9
AL133553-2|CAI17858.1| 5635|Homo sapiens protein ( Human DNA seq... 31 4.9
AL133515-1|CAI17853.1| 5635|Homo sapiens protein ( Human DNA seq... 31 4.9
AL121996-1|CAI17844.1| 5635|Homo sapiens protein ( Human DNA seq... 31 4.9
AL118512-1|CAI17864.1| 5635|Homo sapiens protein ( Human DNA seq... 31 4.9
AK027344-1|BAB55049.1| 741|Homo sapiens protein ( Homo sapiens ... 31 4.9
AJ306906-1|CAC37630.1| 2673|Homo sapiens fibulin-6 protein. 31 4.9
AF156100-1|AAK68690.1| 5636|Homo sapiens hemicentin protein. 31 4.9
>AF031166-1|AAK54351.1| 272|Homo sapiens SRp46 splicing factor
protein.
Length = 272
Score = 36.7 bits (81), Expect = 0.099
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -3
Query: 236 YIRNSFVLSPCSRSRALRSPCSRLVQRHR*SAQSDW-SSGYSG--FPRYHSPR 87
Y R+ + SP SRSR RSP SR R S + SSGYS + RYHS R
Sbjct: 145 YSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSR 197
>AF031165-1|AAK54350.1| 282|Homo sapiens SRp46 splicing factor
protein.
Length = 282
Score = 36.7 bits (81), Expect = 0.099
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -3
Query: 236 YIRNSFVLSPCSRSRALRSPCSRLVQRHR*SAQSDW-SSGYSG--FPRYHSPR 87
Y R+ + SP SRSR RSP SR R S + SSGYS + RYHS R
Sbjct: 155 YSRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSR 207
>BC057783-1|AAH57783.1| 275|Homo sapiens SFRS2B protein protein.
Length = 275
Score = 35.9 bits (79), Expect = 0.17
Identities = 25/53 (47%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Frame = -3
Query: 236 YIRNSFVLSPCSRSRALRSPCSRLVQRHR*SAQSDW-SSGYSG--FPRYHSPR 87
Y R+ + SP SRSR RSP SR R S + SSGYS + RYHS R
Sbjct: 148 YGRSPYSRSPYSRSRYSRSPYSRSRYRESRYGGSHYSSSGYSNSRYSRYHSSR 200
>BX928748-1|CAH74051.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone RP11-465I11 on chromosome 1 Contains part of
the gene for hemicentin (FIBL-6). ).
Length = 5635
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 5593 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 5635
>AL391824-1|CAI17865.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-268N14 on chromosome 1 Contains part of
the gene for hemicentin. ).
Length = 5635
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 5593 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 5635
>AL135797-1|CAI17871.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-77J13 on chromosome 1 Contains part of
the gene for hemicentin. ).
Length = 5635
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 5593 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 5635
>AL135796-1|CAI17854.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-164L12 on chromosome 1 Contains part of
the gene for hemicentin. ).
Length = 5635
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 5593 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 5635
>AL133553-2|CAI17858.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-174L6 on chromosome 1 Contains the3' end
of the gene for hemicentin, the PRG4 gene for
proteoglycan 4 ).
Length = 5635
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 5593 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 5635
>AL133515-1|CAI17853.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-153O3 on chromosome 1 Contains part of
the gene for hemicentin. ).
Length = 5635
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 5593 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 5635
>AL121996-1|CAI17844.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-118G19 on chromosome 1q25.1-31.1 Contains
the 5' end of the gene for hemicentin. ).
Length = 5635
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 5593 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 5635
>AL118512-1|CAI17864.1| 5635|Homo sapiens protein ( Human DNA sequence
from clone GS1-248A21 on chromosome 1q31.1-31.3 Contains
part of the gene for hemicentin (FIBL-6). ).
Length = 5635
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 5593 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 5635
>AK027344-1|BAB55049.1| 741|Homo sapiens protein ( Homo sapiens
cDNA FLJ14438 fis, clone HEMBB1000317, weakly similar to
FIBULIN-1, ISOFORM D PRECURSOR. ).
Length = 741
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 699 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 741
>AJ306906-1|CAC37630.1| 2673|Homo sapiens fibulin-6 protein.
Length = 2673
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 2631 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 2673
>AF156100-1|AAK68690.1| 5636|Homo sapiens hemicentin protein.
Length = 5636
Score = 31.1 bits (67), Expect = 4.9
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Frame = +3
Query: 147 STMPLNKTRTWRTKCARSATWRQNKTVSY-VNFVINTSIQNYPY 275
+T PL + T+R + R++++ N T+ Y F++ ++ YPY
Sbjct: 5594 TTRPLREAETYRMR-VRASSYSANGTIEYQTTFIVYIAVSAYPY 5636
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,059,927
Number of Sequences: 237096
Number of extensions: 1865673
Number of successful extensions: 3547
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 3468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3542
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9980595722
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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