Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1416
         (808 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089293-1|AAL90031.1|  462|Drosophila melanogaster AT08706p pro...    32   1.1  
AE013599-2034|AAF58152.1|  481|Drosophila melanogaster CG8102-PA...    32   1.1  
AE013599-2033|AAM68529.1|  462|Drosophila melanogaster CG8102-PB...    32   1.1  
AE014134-2617|AAF53476.2| 1120|Drosophila melanogaster CG4587-PA...    29   9.9  

>AY089293-1|AAL90031.1|  462|Drosophila melanogaster AT08706p
           protein.
          Length = 462

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 272 WIVLNRGINN--KIYIRNSFVLSPCSRSRALRSPCSRLVQRHR*SAQSDWSSGYSGFP 105
           W  L R  N   K+Y  +  V +PC+    +  P   L++RH    +  W +  + FP
Sbjct: 266 WAGLGRSYNTGTKLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFP 323


>AE013599-2034|AAF58152.1|  481|Drosophila melanogaster CG8102-PA,
           isoform A protein.
          Length = 481

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 272 WIVLNRGINN--KIYIRNSFVLSPCSRSRALRSPCSRLVQRHR*SAQSDWSSGYSGFP 105
           W  L R  N   K+Y  +  V +PC+    +  P   L++RH    +  W +  + FP
Sbjct: 285 WAGLGRSYNTGTKLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFP 342


>AE013599-2033|AAM68529.1|  462|Drosophila melanogaster CG8102-PB,
           isoform B protein.
          Length = 462

 Score = 31.9 bits (69), Expect = 1.1
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 272 WIVLNRGINN--KIYIRNSFVLSPCSRSRALRSPCSRLVQRHR*SAQSDWSSGYSGFP 105
           W  L R  N   K+Y  +  V +PC+    +  P   L++RH    +  W +  + FP
Sbjct: 266 WAGLGRSYNTGTKLYCLSGQVNNPCTVEEEMSIPLKDLIERHAGGVKGGWDNLAAVFP 323


>AE014134-2617|AAF53476.2| 1120|Drosophila melanogaster CG4587-PA
           protein.
          Length = 1120

 Score = 28.7 bits (61), Expect = 9.9
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = -3

Query: 467 VMRHYDTSKRI*T*THR 417
           VM HYD SKR+ T THR
Sbjct: 484 VMNHYDDSKRVSTRTHR 500


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,438,966
Number of Sequences: 53049
Number of extensions: 626790
Number of successful extensions: 1972
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1932
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1972
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3777934368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)