Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1416
         (808 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64847-7|AAB04876.1|  718|Caenorhabditis elegans Acyltransferase...    31   0.97 
U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical p...    28   6.8  

>U64847-7|AAB04876.1|  718|Caenorhabditis elegans
           Acyltransferase-like protein 6,isoform a protein.
          Length = 718

 Score = 31.1 bits (67), Expect = 0.97
 Identities = 27/112 (24%), Positives = 52/112 (46%), Gaps = 11/112 (9%)
 Frame = +2

Query: 77  AVPVEENDNAENQNILNSNRFE-LINDASEQDENMANE-VREICYMATKQNCFVCKFCY* 250
           ++P+  +     +++L+S R   +I+   EQ++   N  V+    ++ + + F+CK C  
Sbjct: 69  SIPLIHHYPNVEKDVLSSKRVHRVISKLKEQNDEQKNRAVQFFTEISARLSKFICKCCSY 128

Query: 251 YLYS----KLSILI*CSETKSCL---PRVDLVSVTTRIHRLPLE--LVMWCN 379
            LY      +  L+ C E    L    +  +  V   +HR  L+  L+ WCN
Sbjct: 129 VLYKVFRRLMDKLLVCKEEMEVLYEAEQTGIPMVYLPLHRSHLDYLLITWCN 180


>U97005-4|AAB52283.1|  314|Caenorhabditis elegans Hypothetical
           protein F19F10.5 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +2

Query: 20  EEPLLVPFSDFFYPV-EPYKAVPVEENDNAENQNILNSNRFELINDASEQDEN 175
           + PLL PF DFF    EP + VP+   +N    +   ++ F L +  S    +
Sbjct: 190 DTPLLAPFPDFFPKANEPMRRVPLFSIENLLASSEETTSNFSLQSSPSSSSNS 242


>U58748-10|AAB52970.2|  701|Caenorhabditis elegans Hypothetical
           protein ZK180.6 protein.
          Length = 701

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
 Frame = -3

Query: 164 VQRHR*SAQSDWSSGYSGFPRYHSPR---RAPLCTAPLDRRNQRKAPGEVL 21
           VQ+HR +A S  SS  S     H P    R P  ++ ++   QR  P  V+
Sbjct: 218 VQQHRPAASSSSSSSSSSASAEHHPTHQVRVPSASSSIESNEQRVVPESVI 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,575,387
Number of Sequences: 27780
Number of extensions: 337154
Number of successful extensions: 946
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1977346024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)