Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1416
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.36 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   3.3  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    23   4.4  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 26.2 bits (55), Expect = 0.36
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = +2

Query: 92  ENDNAENQNILNSNRFELINDASEQDENMANEVRE 196
           +N NA+NQN  N N      +A++Q+ N  N+ R+
Sbjct: 433 DNQNADNQNANNQNADN--QNANKQNGNRQNDNRQ 465



 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 92  ENDNAENQNILNSNR-FELINDASEQDENMANEVRE 196
           +NDN +N N  N NR  +   + + Q++N  N  R+
Sbjct: 460 QNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQ 495



 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +2

Query: 89  EENDNAENQNILNSNRFELINDASEQDENMANE 187
           ++NDN +N N  N N+     + + Q++N  N+
Sbjct: 499 KQNDNKQNGNRQNDNK----RNGNRQNDNQNNQ 527


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 83  PVEENDNAENQNILNSNRFELINDASEQDENMANEVR 193
           PV+END+A+    +  +  E I D  ++   +  ++R
Sbjct: 482 PVKENDHADRVCDMALDMVEAITDLKDRSTGLHLQIR 518


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +2

Query: 125 NSNRFELINDASEQDENMANEVREICYM 208
           NSN+F L+   +E + NMA      C +
Sbjct: 462 NSNQFILMTTVNEGNNNMAATYMNECLL 489


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,552
Number of Sequences: 438
Number of extensions: 4150
Number of successful extensions: 14
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)