Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1416
         (808 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to ac...    29   3.6  
At3g10100.1 68416.m01210 filament protein-related similar to YEA...    29   4.8  
At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata format...    28   6.3  
At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata format...    28   6.3  
At1g67390.1 68414.m07670 F-box family protein contains Pfam PF00...    28   6.3  
At3g01175.1 68416.m00022 expressed protein                             28   8.4  
At2g19640.2 68415.m02295 SET domain-containing protein contains ...    28   8.4  

>At5g65110.1 68418.m08191 acyl-CoA oxidase (ACX2) identical to
           acyl-CoA oxidase [Arabidopsis thaliana] GI:3044212
          Length = 692

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
 Frame = +2

Query: 410 YNLDEFRFKFVWKCRNVASHLDLQCKFLTSFG---RSFN-LTALLSSHPLSAILSCSAGL 577
           + LD FR++     +NVA+ L    K L  FG   R  N L  L  SH  + IL   A  
Sbjct: 538 FQLDAFRYRTSRLLQNVAARLQKHSKTLGGFGAWNRCLNHLLTLAESHIETVIL---AKF 594

Query: 578 LQ*LRLCFDP 607
           ++ ++ C DP
Sbjct: 595 IEAVKNCPDP 604


>At3g10100.1 68416.m01210 filament protein-related similar to YEAST
            NUF1 protein (Spindle poly body spacer protein SPC110)
            (SP:P32380) {Saccharomyces cerevisiae}; similar to Myosin
            heavy chain, smooth muscle isoform (SMMHC) (SP:P35749)
            {Homo sapiens}
          Length = 1004

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 18/68 (26%), Positives = 30/68 (44%)
 Frame = +2

Query: 17   DEEPLLVPFSDFFYPVEPYKAVPVEENDNAENQNILNSNRFELINDASEQDENMANEVRE 196
            ++ P ++   DF  P   Y      + D  E QN +N N   LI+      +   ++ RE
Sbjct: 926  EKNPTIIADGDFRTPSLFYLGPAATDADTTECQNFVNQNFVALISQVGFLHQ---DQCRE 982

Query: 197  ICYMATKQ 220
            + Y  TK+
Sbjct: 983  LQYFRTKK 990


>At4g24190.2 68417.m03473 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 80  VPVEENDNAENQNILNSNRFELINDASEQDENMANEVREI 199
           VPVEE+++A+ +    S   E   DA E+D     + +++
Sbjct: 292 VPVEEDESADEETETTSTEEEKEEDAEEEDGEKKQKTKKV 331


>At4g24190.1 68417.m03472 shepherd protein (SHD) / clavata formation
           protein, putative nearly identical to SHEPHERD
           [Arabidopsis thaliana] GI:19570872; contains Pfam
           profiles PF02518: ATPase, histidine kinase-, DNA gyrase
           B-, and HSP90-like domain protein, PF00183: Hsp90
           protein
          Length = 823

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 80  VPVEENDNAENQNILNSNRFELINDASEQDENMANEVREI 199
           VPVEE+++A+ +    S   E   DA E+D     + +++
Sbjct: 292 VPVEEDESADEETETTSTEEEKEEDAEEEDGEKKQKTKKV 331


>At1g67390.1 68414.m07670 F-box family protein contains Pfam
           PF00646: F-box domain
          Length = 479

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 375 HHITNSNGRRWIRVVTLTKSTR 310
           HH  N     WIR++TL K+TR
Sbjct: 129 HHCVNGVLENWIRLLTLEKNTR 150


>At3g01175.1 68416.m00022 expressed protein 
          Length = 401

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = -3

Query: 386 SKCYTTSLILMEDDGFAS*RSLNLLVEDRILFHCIILVWIVL 261
           S C+     ++  DGF     + L +   +LF C +L+W+ L
Sbjct: 5   SACWLMIESIVIQDGFLKSSYMKLYMHPLVLFLCQLLIWLYL 46


>At2g19640.2 68415.m02295 SET domain-containing protein contains
           Pfam profile PF00856: SET domain
          Length = 398

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 10/47 (21%), Positives = 24/47 (51%)
 Frame = +2

Query: 89  EENDNAENQNILNSNRFELINDASEQDENMANEVREICYMATKQNCF 229
           ++++  E ++ +  N  E+  +  + + N  +    + YM  K+NCF
Sbjct: 318 DQDEQEEMEDSVGENEEEVCGNGVDDESNFPHAYFFVRYMCEKENCF 364


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,416,383
Number of Sequences: 28952
Number of extensions: 301965
Number of successful extensions: 777
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)