Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1415
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 30 0.30
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 28 1.6
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf... 27 2.8
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 27 2.8
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 3.8
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 27 3.8
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 26 5.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 6.6
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch... 26 6.6
SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2... 26 6.6
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 8.7
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 8.7
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 8.7
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 8.7
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 25 8.7
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 8.7
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 8.7
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 25 8.7
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 30.3 bits (65), Expect = 0.30
Identities = 16/55 (29%), Positives = 20/55 (36%)
Frame = +1
Query: 265 PAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKG 429
P H + GE + GE P +H EL H H E+ HKG
Sbjct: 313 PPPMHHEPGEHMPPPPMHHEPGEHMPPPPFKHHELEEHEGPEHHRGPEDKEHHKG 367
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.9 bits (59), Expect = 1.6
Identities = 20/72 (27%), Positives = 35/72 (48%)
Frame = +3
Query: 33 SSSKIY*FTMACSVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVA 212
S SK+ +A S + ++ D P+ +T S L+ F+T + + + VLPS D
Sbjct: 26 SPSKVCRDNIALSEHNVITVLDTPQRSTQCDSLLKSFSTPLV----SGSEDVLPSPRDAL 81
Query: 213 TEKTQKSLFDGI 248
+KS+ D +
Sbjct: 82 NITNKKSVTDNL 93
>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1339
Score = 27.1 bits (57), Expect = 2.8
Identities = 16/77 (20%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Frame = +2
Query: 236 IRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFL----NGIENFDPTKLKHTETC 403
+ R + + + +H E+ E P+ ++ + EKEK+ + +E+ P H T
Sbjct: 789 LSRRKSMPAEIKRHKESSETKPVDKEEVKKNEKEKDDPMRLAQQLLESLAPDFALHENTQ 848
Query: 404 EKNPLPTKDVIEQEKSA 454
+K+P+ + +++ A
Sbjct: 849 QKSPVEKPKKLRKDRYA 865
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 299 PLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPL 418
P D D I+ +E F NG+ +FD +K+ T K+P+
Sbjct: 159 PTCDSD-IDLIREYFSFENGVCSFDNMTVKYVSTSSKSPV 197
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 26.6 bits (56), Expect = 3.8
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +2
Query: 323 EAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQEKSA 454
E EKE K ENF+ + + E E+ L +EQEK+A
Sbjct: 445 EMEKELQKIR---ENFEEERRRAIEVAEQRQLIVNHELEQEKNA 485
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = -1
Query: 217 SVATSSADGSTIFSLVSTSRRQLVLKPSS*LFRSVATLGRSFRE 86
SV + DG + + +++RQ V+ P + F + +GR F+E
Sbjct: 86 SVVAFTKDGERLVGV--SAKRQAVINPENTFFATKRLIGRRFKE 127
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 26.2 bits (55), Expect = 5.0
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = -1
Query: 730 HRKFGYYTLIICIRSVYGVHSLFIGVRRDLSLGFE*NPGLLYVAIAQAVLPLYKNKNKTC 551
+ + G Y I I VYG+H L+ G L F G+ +VA Q L ++
Sbjct: 57 YSRHGLYKAIKHIYHVYGLHGLYQGHTATLYRVFP-YAGIKFVAYEQVRRVLIRDPEHET 115
Query: 550 NGRR 539
+ RR
Sbjct: 116 HARR 119
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +3
Query: 597 MATYSNPGFYSNPNDKSRLTPINSEWTP 680
+++YS+P P+ S +P +SE+TP
Sbjct: 103 VSSYSDPATSQLPSSTSFFSPTSSEYTP 130
>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1822
Score = 25.8 bits (54), Expect = 6.6
Identities = 20/77 (25%), Positives = 34/77 (44%)
Frame = +2
Query: 218 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 397
+ PE ++Y+E D K + P+PD A A EK K +G+ N + +
Sbjct: 89 KSPEGIEQKYQEEDLKDDKKSNETIATPVPDA-ASRASLEKQK--SGLTNLEKSTHVVLI 145
Query: 398 TCEKNPLPTKDVIEQEK 448
C + + K ++ EK
Sbjct: 146 KCIEQLIQIKVCMKNEK 162
>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 426
Score = 25.8 bits (54), Expect = 6.6
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -3
Query: 224 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQ 120
G ++G +S +LFIGVD G+ F LQ
Sbjct: 385 GEIAGTAYSSSGDSLFIGVDDPMLGGILEFRRPLQ 419
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +2
Query: 332 KEKNKFLNGIENFDPTKLKHTETCEKN 412
K + K L G ++ DP L+ + CE+N
Sbjct: 307 KMQEKELEGSDSIDPILLEKIDVCEEN 333
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.4 bits (53), Expect = 8.7
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +2
Query: 251 EVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
EV +++ + T E P D DA+ KN F +E+FD
Sbjct: 87 EVKTTEPQDLSTAETAPKVDIDAVPTIDGKNIFEIDLESFD 127
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = -2
Query: 606 TSPLPRQCCHCTKTKIKLVMDDANRSDLHQY*KRRY 499
TSPLP+ C K + L + +RS +H RY
Sbjct: 48 TSPLPQISCLLRKDDVPLANKELSRSLIHVQELSRY 83
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 226 WVFSVATSSADGSTIFSLVSTSRRQL 149
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = -1
Query: 229 FWVFSVATSSADGSTIFSLVSTSRRQLVLKPSS 131
FW +S+ S G I SL + RQ + +PSS
Sbjct: 83 FWGYSLTFSHEGGPYIGSLANFGLRQTLGRPSS 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,016,103
Number of Sequences: 5004
Number of extensions: 63641
Number of successful extensions: 228
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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