Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1415
(748 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 71 1e-12
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.035
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 30 1.7
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 30 1.7
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 30 1.7
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.3
SB_46951| Best HMM Match : CUB (HMM E-Value=1.3e-32) 30 2.3
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7) 30 2.3
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 29 3.0
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.0
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 5.3
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 7.0
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 70.9 bits (166), Expect = 1e-12
Identities = 37/79 (46%), Positives = 48/79 (60%), Gaps = 2/79 (2%)
Frame = +2
Query: 224 PEVF--IRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 397
PEV + D+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +
Sbjct: 674 PEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDITTESTETR--AEVKTFDHSKLKHVQ 731
Query: 398 TCEKNPLPTKDVIEQEKSA 454
T EKNPLP I QEK++
Sbjct: 732 TEEKNPLPDAKTIAQEKAS 750
Score = 66.5 bits (155), Expect = 2e-11
Identities = 33/66 (50%), Positives = 40/66 (60%)
Frame = +2
Query: 248 REVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTK 427
+ + S+L+H ET+EKN LP KD I EK F +G+E F KLKH ET EKNPLP
Sbjct: 455 KSFEKSKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVETLEKNPLPDA 513
Query: 428 DVIEQE 445
I E
Sbjct: 514 QNIRAE 519
Score = 65.7 bits (153), Expect = 4e-11
Identities = 32/70 (45%), Positives = 42/70 (60%), Gaps = 2/70 (2%)
Frame = +2
Query: 248 REVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKF--LNGIENFDPTKLKHTETCEKNPLP 421
+ D S+LKH ET EKNPLP ++ E ++ + +FD +KLKH E EKNPLP
Sbjct: 644 KSFDHSKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLP 703
Query: 422 TKDVIEQEKS 451
TKD I E +
Sbjct: 704 TKDDITTEST 713
Score = 65.3 bits (152), Expect = 5e-11
Identities = 31/66 (46%), Positives = 45/66 (68%), Gaps = 2/66 (3%)
Frame = +2
Query: 257 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFDPTKLKHTETCEKNPLPTKD 430
D++ LKH +T+EKN LP + I+ E + ++F + E +F+ +KL+H ET EKN LPTKD
Sbjct: 418 DAANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKD 477
Query: 431 VIEQEK 448
I EK
Sbjct: 478 TIADEK 483
Score = 64.1 bits (149), Expect = 1e-10
Identities = 35/76 (46%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Frame = +2
Query: 224 PEVFIRRYR--EVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTE 397
PEV R + D+S+LKH ET+EK +P KD IEAE ++ +++FD +KLKH
Sbjct: 522 PEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVV 579
Query: 398 TCEKNPLPTKDVIEQE 445
T EKNPLPT + +E
Sbjct: 580 TQEKNPLPTPQTLHEE 595
Score = 62.9 bits (146), Expect = 3e-10
Identities = 34/63 (53%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +2
Query: 263 SQLKHTETQEKNPLPDKDAIEAEK--EKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 436
++LKH ET EKNPLPD I AE E + + FD +KLKH ET EK +PTKDVI
Sbjct: 497 NKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVI 556
Query: 437 EQE 445
E E
Sbjct: 557 EAE 559
Score = 58.4 bits (135), Expect = 6e-09
Identities = 27/63 (42%), Positives = 44/63 (69%)
Frame = +2
Query: 257 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 436
D ++LKH TQEK+ +P ++ I+ E ++ +++FD +KLKH ET EKNPLP+ V+
Sbjct: 611 DHTKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAVL 668
Query: 437 EQE 445
++E
Sbjct: 669 KEE 671
Score = 56.4 bits (130), Expect = 2e-08
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Frame = +2
Query: 248 REVDSSQLKHTETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNPLP 421
+ D S+LKH TQEKNPLP + E KNK + + +FD TKLKH T EK+ +P
Sbjct: 568 KSFDHSKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMP 627
Query: 422 TKDVIEQE 445
+++ I++E
Sbjct: 628 SQEDIKEE 635
Score = 35.1 bits (77), Expect = 0.061
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +2
Query: 359 IENFDPTKLKHTETCEKNPLPTKDVIEQE 445
+ FD LKH +T EKN LP+ + I+QE
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQE 442
Score = 33.9 bits (74), Expect = 0.14
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +3
Query: 99 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 218
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.75
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 99 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 218
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.035
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +3
Query: 87 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 242
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 292 EEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEP 414
EEP+ + +G KE+ E RE R H + V+EEP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -3
Query: 224 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 81
GLL+GD+F R K N+ I VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/63 (31%), Positives = 27/63 (42%)
Frame = +2
Query: 257 DSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 436
D Q K E PD+D +E E+E NG+E+ D K + PT DV
Sbjct: 840 DVKQRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDVE 896
Query: 437 EQE 445
Q+
Sbjct: 897 TQQ 899
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.3
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 69 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 215
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_46951| Best HMM Match : CUB (HMM E-Value=1.3e-32)
Length = 194
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +3
Query: 492 LASIAVFNIDVSQIDLRRPLQVLFLFLYNGNTAWAMATYSNPGFYSNPNDKS 647
+ +IAVF I ++ + P + G A T+S+P F SN D +
Sbjct: 1 MTAIAVFGIIIAVVSAENPASTYYRGGCGGTITGASGTFSSPNFPSNYPDNA 52
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 2.3
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -3
Query: 224 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFEL 129
GLL+GD+F R K N+ I VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_19898| Best HMM Match : Merozoite_SPAM (HMM E-Value=3.7)
Length = 446
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +2
Query: 218 EDPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHT- 394
E VF +R R + + + TET+E NP D +AE+ + G + T+ K T
Sbjct: 274 EGKSVF-KRNRPTEPASVPSTETKEANPNVTADTKQAEQNEGSMSEGTTSKTITENKTTN 332
Query: 395 -ETCEKNPL 418
ET K L
Sbjct: 333 METLRKEML 341
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.9 bits (64), Expect = 2.3
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +1
Query: 466 FITVTRKCISLVSPFLILM*VRSICVVHYKFYFCFCTMATLPG 594
F T +SL S ++ +R IC VH FY+C C +++ G
Sbjct: 39 FRLATHVILSLESRDTLVAVLR-ICSVHLDFYYCTCVWSSMAG 80
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +2
Query: 17 ESSIPFLIKNILIHNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 151
E S+PF N N ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 29.1 bits (62), Expect = 4.0
Identities = 25/73 (34%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Frame = +1
Query: 157 SVTSTPMKRLCFRLLKTSPLRRPRSLY-----STVSRS*FEPAEAHRDSGEEPASGQRCY 321
SVT T +RL R S L PRS+ T+ R A R GEE G+ Y
Sbjct: 438 SVTGTFARRLVSRTTDASSLEDPRSVVVTSSPRTLGRISNGTTSARRVEGEEHVCGE--Y 495
Query: 322 RSGEGKEQIPERH 360
+ KE +P H
Sbjct: 496 KCSLCKEVVPPDH 508
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 4.0
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +2
Query: 272 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 409
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 219 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 103
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 7.0
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +3
Query: 90 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 218
L DL +V +LKS+ EG CL D++ + DV E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,885,610
Number of Sequences: 59808
Number of extensions: 503796
Number of successful extensions: 1609
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1598
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2022185256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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