Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1415
         (748 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    56   3e-08
AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical...    30   1.5  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    28   6.1  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   6.1  
AL132948-19|CAD31820.1|  395|Caenorhabditis elegans Hypothetical...    28   8.1  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = +2

Query: 266 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
           +LK  ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QE
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 446 K 448
           K
Sbjct: 83  K 83



 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 28/72 (38%), Positives = 39/72 (54%)
 Frame = +2

Query: 236 IRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNP 415
           I      DS++L  T  +EK  LP  D I+ EK+  +  + I NF    LK TET EKN 
Sbjct: 51  IHEIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNV 110

Query: 416 LPTKDVIEQEKS 451
           LP+   + +EK+
Sbjct: 111 LPSPTDVAREKT 122



 Score = 35.9 bits (79), Expect = 0.030
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +3

Query: 129 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGI 248
           ++E F+++ L      EKIVLPSA+D+  EK    L D I
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKI 92



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 22/56 (39%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +3

Query: 87  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 251
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIE 55



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +3

Query: 84  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 224
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122


>AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical
           protein T12B5.3 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +2

Query: 548 ITSFIFVFVQWQHCLGNGDVQQPRILFKS*RQVAPYANKQRVDAINRSNTDN 703
           ITSFI  F++ + C+   ++   R+LF     + P+ N + ++ I  S TDN
Sbjct: 131 ITSFIN-FLKAKDCIHVKEIHFNRLLFDDILSILPFFNAKVLENIKLSETDN 181


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +2

Query: 272 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 373
           KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +1

Query: 22  FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 201
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 202 KTSPLRR 222
             +P+++
Sbjct: 76  TVTPIQQ 82


>AL132948-19|CAD31820.1|  395|Caenorhabditis elegans Hypothetical
           protein Y39B6A.23 protein.
          Length = 395

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = +3

Query: 507 VFNIDVSQIDLRRPLQVLFLFLYNGNTAWAMATYSNPGF 623
           VF I   Q  ++    +L L L NG    AM +YSN GF
Sbjct: 323 VFTIGGMQYPVKSIEYILDLGLGNGRCVLAMLSYSNTGF 361


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,756,860
Number of Sequences: 27780
Number of extensions: 365745
Number of successful extensions: 1228
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)