Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1415
         (748 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    28   0.11 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.0  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   5.3  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   5.3  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              21   9.3  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.3  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 27.9 bits (59), Expect = 0.11
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 214 LRRPRSLYSTVSRS*FEPAEAHRDSGEEPASGQR 315
           LRR R L +TV+R+       H DSG   ++ QR
Sbjct: 248 LRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQR 281



 Score = 21.8 bits (44), Expect = 7.0
 Identities = 10/34 (29%), Positives = 21/34 (61%)
 Frame = +1

Query: 442 REISLNHYFITVTRKCISLVSPFLILM*VRSICV 543
           R I++ H FI+ T   +S    F+I++ + ++C+
Sbjct: 152 RYIAICHPFISHTMSKLSRAVKFIIVIWLLALCL 185


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 69  SVSDTPSLKDLPKVATDLKS 128
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +1

Query: 565 CFCTMATLPGQWRRTATPDFIQIL 636
           C C+M  LPG   +T+T ++ +I+
Sbjct: 684 CNCSMDWLPGINNQTSTREYPRIM 707


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +3

Query: 477 YSQMYLASIAVFNIDVSQI 533
           Y+ + L  + + N+DVSQ+
Sbjct: 457 YNDLILPGVTIQNVDVSQL 475


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +2

Query: 224 PEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETC 403
           P+V  +RY++V+ SQ+    +  K+ + +       K K+   + IEN   T+   + T 
Sbjct: 181 PDVEEQRYKQVEISQMTEPSSSTKSYVLEGPRNGKRKRKS---STIENESETESNASSTK 237

Query: 404 EK 409
            K
Sbjct: 238 TK 239


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 117 DLKSQLEGFNTSCLRDVDTNEKIV 188
           +LKS L    + C++++ T ++I+
Sbjct: 21  ELKSGLHTVQSVCMKEIGTAQQII 44


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -3

Query: 539 QIDLTYINIKNGDTSEI 489
           QIDL +IN   GD  EI
Sbjct: 172 QIDLKHINQNMGDKVEI 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 204,961
Number of Sequences: 438
Number of extensions: 4881
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23388480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)