Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1415
(748 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 32 0.46
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ... 31 0.61
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 31 0.61
At2g02720.1 68415.m00214 pectate lyase family protein similar to... 31 0.81
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi... 30 1.9
At1g51900.1 68414.m05850 hypothetical protein 29 2.5
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 3.3
At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot... 29 4.3
At3g28770.1 68416.m03591 expressed protein 29 4.3
At1g23230.1 68414.m02906 expressed protein 29 4.3
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f... 28 5.7
At4g05280.1 68417.m00799 Ulp1 protease family protein contains P... 28 5.7
At3g57780.1 68416.m06436 expressed protein 28 5.7
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243... 28 5.7
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 28 5.7
At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA methyltran... 28 5.7
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si... 28 7.6
At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low... 27 10.0
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 31.9 bits (69), Expect = 0.46
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Frame = +1
Query: 100 SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRS*FEPAE 273
SP ++ R S++ P+ S +S R + ++ PL R RSLYS+VSRS
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252
Query: 274 AHRDSGEEPAS 306
R P S
Sbjct: 253 RSRSRSNSPVS 263
>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
SP|Q07283 Trichohyalin {Homo sapiens}
Length = 1400
Score = 31.5 bits (68), Expect = 0.61
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = +2
Query: 248 REVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPT 424
+E Q+K + +E+N K+ +E + + K +E + +LK T E+N
Sbjct: 772 QEEKERQIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKL 831
Query: 425 KDVIEQEKSAXXXXXXXXXANVSR 496
++ IE E+ A + R
Sbjct: 832 REAIELEEKEKRLIEAFERAEIER 855
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 31.5 bits (68), Expect = 0.61
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 4/127 (3%)
Frame = +1
Query: 7 LSARIFYPLPHQKYIDSQWPAP*VTLPP*KT----SPRSPQT*RVSSKASTPAVSVTSTP 174
++ R+ P P + + S PA + PP + SP ++ +P+ S S P
Sbjct: 456 VAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSLSPP 515
Query: 175 MKRLCFRLLKTSPLRRPRSLYSTVSRS*FEPAEAHRDSGEEPASGQRCYRSGEGKEQIPE 354
++ ++L + P+RR RSL R H G G GK
Sbjct: 516 GRK---KVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSS 572
Query: 355 RHRELRS 375
RH++ RS
Sbjct: 573 RHQKARS 579
>At2g02720.1 68415.m00214 pectate lyase family protein similar to
pectate lyase P59 SP:P15722 from [Lycopersicon
esculentum]
Length = 455
Score = 31.1 bits (67), Expect = 0.81
Identities = 17/58 (29%), Positives = 24/58 (41%)
Frame = +2
Query: 272 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 445
K +E P P+ + + EK+ FLNG K KNP+P K I +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432
>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
protein contains Pfam profile PF01388: ARID/BRIGHT DNA
binding domain
Length = 786
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Frame = +3
Query: 57 TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 227
T S+ + + DLPK+ + SQ E + S +DT E ++ P+AED E
Sbjct: 74 TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133
Query: 228 KS 233
S
Sbjct: 134 SS 135
>At1g51900.1 68414.m05850 hypothetical protein
Length = 774
Score = 29.5 bits (63), Expect = 2.5
Identities = 22/76 (28%), Positives = 36/76 (47%)
Frame = +2
Query: 221 DPEVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 400
DP+++IR Y E + K + T + + + D+IE K + L+ I LK +
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEG--VKCRMLDEIMKKSGHHLKISRP 419
Query: 401 CEKNPLPTKDVIEQEK 448
E P K V E+E+
Sbjct: 420 -EYKPEIEKQVYEEEE 434
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
domain PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 278 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
TE E + LPD ++ +K K + +N + N+D
Sbjct: 12 TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43
>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 571
Score = 28.7 bits (61), Expect = 4.3
Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
Frame = +1
Query: 124 RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSRS*FEPAE-AHRDSGEEP 300
+++++AST A P+ R+ ++L LR S ++V+ S P E + GEE
Sbjct: 438 KLTNEASTHAAQNERLPL-RVVVQVLYFEQLRANHSPVASVAASSHSPVEKTEENKGEEA 496
Query: 301 AS---------GQRCYRSGEGKEQIPERHREL 369
G + RSG G + +P R R +
Sbjct: 497 TKKVELSKKSRGSKSTRSGGGAQLMPSRSRRI 528
>At3g28770.1 68416.m03591 expressed protein
Length = 2081
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Frame = +2
Query: 236 IRRYREVDSSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKN 412
+R E K +E EK + KDA E + NK L+ EN D K + E +++
Sbjct: 768 VRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKED 827
Query: 413 PLPTKD 430
+KD
Sbjct: 828 KEESKD 833
>At1g23230.1 68414.m02906 expressed protein
Length = 1615
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -3
Query: 428 PLWGAGSSRTFPCASA*WDRSSRC-RSGICSFPSP 327
PL+G + + P S W+R+ RC R I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427
>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
family protein / UPP synthetase family protein contains
putative undecaprenyl diphosphate synthase domain
[PF01255]; similar to S. cerevisiae dehydrodolichyl
diphosphate synthetase (DEDOL-PP
synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
Length = 271
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = -3
Query: 221 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 102
++ G+ +KHNL IG+D AG + + LQ C ++G
Sbjct: 41 IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79
>At4g05280.1 68417.m00799 Ulp1 protease family protein contains Pfam
profile PF02902: Ulp1 protease family, C-terminal
catalytic domain; similar to At3g24380, At5g36840,
At5g35010, At3g42740, At4g05290, At2g14770, At3g43390,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At1g25886, At4g03300
Length = 1312
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +2
Query: 233 FIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKN 412
+ R +++ QL+ T+ + K P E +K I D K ++ E C
Sbjct: 348 YARVPKQLRPPQLEETDVKRKRNAPGPSPKEPAMKKQ-----ISEMDCDKEENAEDCFGE 402
Query: 413 PLPTKDVIEQEKS 451
P+P + ++E +S
Sbjct: 403 PVPERFIVEMRRS 415
>At3g57780.1 68416.m06436 expressed protein
Length = 670
Score = 28.3 bits (60), Expect = 5.7
Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Frame = +2
Query: 257 DSSQLKHTETQEK-NPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCE 406
DSS+ TE +E N L D E EKE++K L+ I + + ETCE
Sbjct: 72 DSSE--KTEKEETINGLACDDEDEEEKEESKELDAIAHEKTDSVSSPETCE 120
>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
At4g05280, At1g25886, At4g03300
Length = 1113
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/73 (23%), Positives = 32/73 (43%)
Frame = +2
Query: 233 FIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKN 412
+ R +++ QL+ T+ + K P E +K K D K ++ E C
Sbjct: 402 YARVPKQLCPPQLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGE 456
Query: 413 PLPTKDVIEQEKS 451
P+P + ++E +S
Sbjct: 457 PVPERFIVEMRRS 469
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 28.3 bits (60), Expect = 5.7
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 286 SGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 465
S E+ A R + + K + ER + SH ++ ++R EP H RE+ Y
Sbjct: 489 SAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEY 548
>At3g02320.1 68416.m00214 N2,N2-dimethylguanosine tRNA
methyltransferase family protein similar to
N2,N2-dimethylguanosine tRNA methyltransferase [Homo
sapiens] GI:11066198; contains Pfam profile PF02005:
N2,N2-dimethylguanosine tRNA methyltransferase
Length = 599
Score = 28.3 bits (60), Expect = 5.7
Identities = 17/49 (34%), Positives = 25/49 (51%)
Frame = +2
Query: 227 EVFIRRYREVDSSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 373
E +R +E ++ K T K + +KDA EA KE+ NG+ N D
Sbjct: 45 EFLSKRKQEHEAKSSKRTRPASK--VIEKDASEASKEETPSENGMNNGD 91
>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
similar to sucrose-phosphate synthase isoform 1, Citrus
unshiu, PIR:S72648
Length = 894
Score = 27.9 bits (59), Expect = 7.6
Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 69 SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 221
S SD+PS L+D+ ++ +LK L+G + VDTN AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579
>At1g49980.1 68414.m05609 UMUC-like DNA repair family protein low
similarity to DNA polymerase kappa [Mus musculus]
GI:14279087; contains Pfam profile PF00817:
ImpB/MucB/SamB family
Length = 785
Score = 27.5 bits (58), Expect = 10.0
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = -3
Query: 224 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGE 99
GL G++ + +++ +T +AGV A L +VC D+ +
Sbjct: 214 GLSGGEIAEELRSSVYSETGLTCSAGVAANRLLAKVCSDINK 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,869,108
Number of Sequences: 28952
Number of extensions: 344115
Number of successful extensions: 1064
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1064
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1653386488
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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