Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1414
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|ch...    31   0.24 
SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyc...    29   0.55 
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    28   1.7  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   2.2  

>SPAC1250.02 |mug95||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 178

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 18/68 (26%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
 Frame = +3

Query: 267 DISESNIRFNKDYKTVADVLVQETIKANIEKAFPELKNQVRG--EESSEINGQVIVLKNF 440
           ++S+S ++ N++ +   D+          EK  P    Q  G  E+ S+ NG++IVL   
Sbjct: 56  ELSKSELKPNEEKELPKDIKEDCKTVEEKEKVVPRKPLQSEGINEDDSQKNGELIVLHGI 115

Query: 441 DHTVELLS 464
           +H   +L+
Sbjct: 116 NHQAAMLT 123


>SPBC18H10.16 |||amino acid permease, unknown 9|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1050

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 77  WWVSIYTACVVFECYIL 127
           WWV +YT CV+  C IL
Sbjct: 203 WWVFLYTTCVLAMCCIL 219


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 669 VTHIKPFPGSASPLTPAINSNVASIGSIHIPISDN 565
           V H K  PGS   L   + S ++SI   H+   DN
Sbjct: 111 VNHSKAGPGSGKLLNDTLQSKISSIHMPHVQQGDN 145


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = -3

Query: 753 PWPSLAKGWLITPIIGSPVD--IRYAPIRTVTHIKPFPGSASPLTPAINSNVASIGSIHI 580
           P      G+ ITPI+       +RY     +  +KP     +P  PAIN+N+A       
Sbjct: 8   PRKKAPNGYGITPIVAHKTGEPVRYEVEDDLRKLKP--SRTAPKPPAINTNLAEDTFSGF 65

Query: 579 PISDN 565
           P+S +
Sbjct: 66  PLSQS 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,712,698
Number of Sequences: 5004
Number of extensions: 51631
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)