Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1414
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0658 + 4923205-4923334,4923448-4923526,4923629-4923723,492...    30   1.7  
06_03_0355 + 19822110-19824491                                         29   4.0  
03_01_0093 - 745434-746057,746492-747112,747222-747791,747870-74...    28   9.3  

>07_01_0658 +
           4923205-4923334,4923448-4923526,4923629-4923723,
           4923802-4923851,4924216-4924340,4924703-4924769,
           4924871-4924960,4925281-4925392,4925597-4925667
          Length = 272

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 22/56 (39%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +2

Query: 581 IWI-DPIDATFEFIAGVRGEAEPGKGLICVTVLIGAYLISTGEPIIGVINQPFANE 745
           +W+ DPID T  FI G     +P  G      LI   L+  G+P+IG+I+QP   E
Sbjct: 87  VWVLDPIDGTKSFITG-----KPLFG-----TLIS--LLYKGKPVIGIIDQPILRE 130


>06_03_0355 + 19822110-19824491
          Length = 793

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 13/68 (19%), Positives = 37/68 (54%)
 Frame = +3

Query: 270 ISESNIRFNKDYKTVADVLVQETIKANIEKAFPELKNQVRGEESSEINGQVIVLKNFDHT 449
           +S++++ + +  + + DVLV++   AN+ +   ++   +      + N     L+ F+H 
Sbjct: 484 MSKASMFYEQKERELQDVLVEKQYLANMLQEKEQIIQSLNSARFEQENKWQAELRRFEHD 543

Query: 450 VELLSQLI 473
           + +++QL+
Sbjct: 544 LNVMAQLV 551


>03_01_0093 -
           745434-746057,746492-747112,747222-747791,747870-747948,
           748258-748331,748385-748387
          Length = 656

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/62 (25%), Positives = 33/62 (53%), Gaps = 3/62 (4%)
 Frame = +3

Query: 261 EKDISESNIRFNKDYKTVADVLVQETIKA---NIEKAFPELKNQVRGEESSEINGQVIVL 431
           +K + E+ +   KD +  A + ++ T      +IEK+  E ++++  E +SEI   +  L
Sbjct: 538 QKMVHEAELHSQKDQERKALIDIRNTADTTIYSIEKSLGEYRDKIPAEVASEIETAIADL 597

Query: 432 KN 437
           +N
Sbjct: 598 RN 599


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,433,610
Number of Sequences: 37544
Number of extensions: 289974
Number of successful extensions: 750
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)