Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1414
(761 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.) 66 4e-11
SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29) 34 0.11
SB_43191| Best HMM Match : Inositol_P (HMM E-Value=1.1e-18) 33 0.33
SB_31786| Best HMM Match : Hexapep (HMM E-Value=0.00028) 30 1.8
SB_42922| Best HMM Match : Tcp11 (HMM E-Value=0) 29 3.1
SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.1
SB_33039| Best HMM Match : Tcp11 (HMM E-Value=5.8e-35) 29 5.5
SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42) 29 5.5
SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14) 28 9.5
SB_30939| Best HMM Match : ACN9 (HMM E-Value=1.6e-35) 28 9.5
SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.5
>SB_39361| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 397
Score = 65.7 bits (153), Expect = 4e-11
Identities = 33/57 (57%), Positives = 39/57 (68%), Gaps = 3/57 (5%)
Frame = +2
Query: 575 IGIWIDPIDATFEFIAGVRGEAEPG---KGLICVTVLIGAYLISTGEPIIGVINQPF 736
IGIWIDPID T ++++G G G +GL CV VLIG Y TG+PI GVINQPF
Sbjct: 150 IGIWIDPIDGTAQYMSGSHGVFTNGLLAQGLPCVCVLIGVYDEITGQPIAGVINQPF 206
Score = 59.7 bits (138), Expect = 3e-09
Identities = 33/82 (40%), Positives = 49/82 (59%), Gaps = 6/82 (7%)
Frame = +3
Query: 249 IIVAEKDISESNIRFNKDYKTVADVLVQETIKANIEKAFPELKNQVRGEESSEI---NGQ 419
++V EK E N RF D+KT+ADV+VQE +K ++ + FP LK + GEES++ +G
Sbjct: 31 LLVEEKTGKEKNERFVADFKTLADVIVQEVVKRDVIQEFPHLKGHIHGEESNKFTLNDGH 90
Query: 420 VIVLKNFD---HTVELLSQLIP 476
I + D T E L Q++P
Sbjct: 91 TITIAIQDTPRATAEHLGQVLP 112
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/36 (38%), Positives = 24/36 (66%)
Frame = +1
Query: 160 MVNLLATLILASEKAARIARSCVSNTQKDALLLLKK 267
M NL+ L+ SEK+A IAR+ ++ + +LL+ +K
Sbjct: 1 MDNLIRVLLRTSEKSASIARAWITQKELFSLLVEEK 36
>SB_23047| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1601
Score = 46.0 bits (104), Expect = 3e-05
Identities = 25/51 (49%), Positives = 31/51 (60%), Gaps = 3/51 (5%)
Frame = +2
Query: 593 PIDATFEFIAGVRGEAEPG---KGLICVTVLIGAYLISTGEPIIGVINQPF 736
P T ++++G G G +GL CV VLIG Y TG+PI GVINQPF
Sbjct: 1453 PPHGTAQYMSGSHGVFTNGLLAQGLPCVCVLIGVYDEITGQPIAGVINQPF 1503
>SB_47003| Best HMM Match : Mito_carr (HMM E-Value=2.3e-29)
Length = 868
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = +2
Query: 581 IWIDPIDATFEFIAGVRGEAEPGKGLI 661
+W+DP+D T EF GV E P G+I
Sbjct: 5 VWVDPVDGTKEFTEGVSYEGRPVAGVI 31
>SB_43191| Best HMM Match : Inositol_P (HMM E-Value=1.1e-18)
Length = 240
Score = 32.7 bits (71), Expect = 0.33
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +2
Query: 581 IWIDPIDATFEFIAGVRGEAEPGKGLICVTVLIGAYLISTGEPIIGVINQPF 736
+WIDP+DAT E+ + L VT ++ ++ G+P+ GVI++PF
Sbjct: 59 VWIDPLDATKEYTENL---------LHFVTTMV--CIVVNGKPVAGVIHKPF 99
>SB_31786| Best HMM Match : Hexapep (HMM E-Value=0.00028)
Length = 348
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 669 VTHIKPFPGSASPLTPAINSNVASIGSI 586
+THI P GSAS L+P I + + SI
Sbjct: 121 ITHIAPLDGSASALSPVIADSAVVLNSI 148
Score = 28.7 bits (61), Expect = 5.5
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 669 VTHIKPFPGSASPLTPAINSNVASIGSI 586
+THI P GSAS L+P I + SI
Sbjct: 208 ITHIAPLDGSASALSPVIADLAVVLNSI 235
>SB_42922| Best HMM Match : Tcp11 (HMM E-Value=0)
Length = 392
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +3
Query: 240 KRRIIVAEKDISESNIRFNKDYKTVADVLVQETIKANIEKAFPELKNQVRGEESSEINGQ 419
K + V + + E +I + + ++D ++ ET K E+ +L E+ S I GQ
Sbjct: 323 KEVLFVLLEGLGEGDI--SSSMQNISDQVISETSKVLCERGLAQLTE----EQKSAIQGQ 376
Query: 420 VIVLKNFDHTVELL 461
+ + N +H V L
Sbjct: 377 IAAVGNPEHVVRKL 390
>SB_52654| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 105
Score = 29.1 bits (62), Expect = 4.1
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -2
Query: 181 MLLINSPFRIQISQINMQQYITFEDHASSVDGD 83
M +IN+ + ++ + Q Y++F+DH + DGD
Sbjct: 1 MFVINAILVLFMAALTSQAYVSFDDHDACRDGD 33
>SB_33039| Best HMM Match : Tcp11 (HMM E-Value=5.8e-35)
Length = 428
Score = 28.7 bits (61), Expect = 5.5
Identities = 19/74 (25%), Positives = 34/74 (45%)
Frame = +3
Query: 240 KRRIIVAEKDISESNIRFNKDYKTVADVLVQETIKANIEKAFPELKNQVRGEESSEINGQ 419
K + V + E +I + + ++D ++ ET K E+ +L E+ S I GQ
Sbjct: 234 KEVLFVLLDGLGEGDI--SSSMQNISDQVISETSKVLCERGLAQLTE----EQKSAIQGQ 287
Query: 420 VIVLKNFDHTVELL 461
+ + N +H V L
Sbjct: 288 IAAVGNPEHVVRKL 301
>SB_52131| Best HMM Match : AIRS_C (HMM E-Value=1.69978e-42)
Length = 1371
Score = 28.7 bits (61), Expect = 5.5
Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +3
Query: 366 PELKN-QVRGEESSEINGQVIVLKNFDHTVELLSQ 467
P++ N QVR E+ E+ G + + F+ T ELLSQ
Sbjct: 900 PDMDNPQVRTEKGMEVLGSWLFISAFNTTQELLSQ 934
>SB_43138| Best HMM Match : Pox_A_type_inc (HMM E-Value=1.3e-14)
Length = 1709
Score = 27.9 bits (59), Expect = 9.5
Identities = 22/83 (26%), Positives = 39/83 (46%)
Frame = +3
Query: 165 EFISNIDISLRKSCSDR*VMCEQYTKRRIIVAEKDISESNIRFNKDYKTVADVLVQETIK 344
EF S ++ SL + S Y + ++ E + K+ K + D L ++ K
Sbjct: 502 EFQSKVE-SLEQELSAERAKVADY-EAKLGDVEMQVQAFKAEKEKEVKFIEDELKKQC-K 558
Query: 345 ANIEKAFPELKNQVRGEESSEIN 413
A +EK ELK + +GE + ++N
Sbjct: 559 ALVEKKAKELKEKYQGELNEKVN 581
>SB_30939| Best HMM Match : ACN9 (HMM E-Value=1.6e-35)
Length = 115
Score = 27.9 bits (59), Expect = 9.5
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +3
Query: 228 EQYTKRRIIVAEKDISESNIRFNKDYKTVADVLVQETIKANIEKAFPELKNQVRGEESSE 407
+QY K +K E +RF +++K AD + Q+ + +LK++ + E
Sbjct: 33 DQYAKDEFRRHKKASQEQAVRFMQEWKIYADTIEQQVNSQQLNVLGKDLKDEHIESLTEE 92
Query: 408 INGQVIVLK 434
GQ+ L+
Sbjct: 93 QLGQLYSLQ 101
>SB_11551| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 765
Score = 27.9 bits (59), Expect = 9.5
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Frame = -1
Query: 341 YCFLY*NICNGLVILIKTNIGFRNIFFS--NNNASFCVLLTHDLAIRAAFSEANINVANK 168
YC + N C VI +T + +R I F+ + FC + + I + S A + + +
Sbjct: 402 YCGIRVNYCGIRVIFCRTRVNYRGIQFNYRGSRVIFCGIAGYRTFITRSRSSAAVALESA 461
Query: 167 FTI 159
F +
Sbjct: 462 FLV 464
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,706,094
Number of Sequences: 59808
Number of extensions: 353547
Number of successful extensions: 927
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 923
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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