Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1414
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U42833-4|AAA83579.1| 319|Caenorhabditis elegans Hypothetical pr... 37 0.014
AL032655-9|CAA21725.3| 339|Caenorhabditis elegans Hypothetical ... 33 0.22
AL032655-8|CAH60799.1| 348|Caenorhabditis elegans Hypothetical ... 33 0.22
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical... 31 0.89
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical... 31 0.89
AC024761-2|AAF59463.1| 174|Caenorhabditis elegans Hypothetical ... 30 1.6
U00050-3|AAL02480.1| 556|Caenorhabditis elegans Hypothetical pr... 29 2.7
U00050-2|AAL02479.1| 582|Caenorhabditis elegans Hypothetical pr... 29 2.7
U00050-1|AAA50697.1| 583|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z79596-4|CAB01856.2| 554|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z79596-3|CAI79132.1| 561|Caenorhabditis elegans Hypothetical pr... 29 4.8
>U42833-4|AAA83579.1| 319|Caenorhabditis elegans Hypothetical
protein ZK430.2 protein.
Length = 319
Score = 37.1 bits (82), Expect = 0.014
Identities = 20/52 (38%), Positives = 30/52 (57%)
Frame = +2
Query: 581 IWIDPIDATFEFIAGVRGEAEPGKGLICVTVLIGAYLISTGEPIIGVINQPF 736
+W+DP+D T E V+ + L VTVLIG + G P+ G+I+QP+
Sbjct: 116 VWVDPLDGTSEVALAVKNKNM--ALLEQVTVLIG--IAYKGRPVAGIIHQPY 163
>AL032655-9|CAA21725.3| 339|Caenorhabditis elegans Hypothetical
protein Y6B3B.5a protein.
Length = 339
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 575 IGIWIDPIDATFEFIAGVRGEAEPGKGLICVTVLIGAYLISTGEPIIGVINQPFANE 745
+ +++DP+DAT EF G+ VTV+ A ++ EPI G I +PF NE
Sbjct: 152 VRVFVDPLDATQEFTEGLTEY---------VTVM--ACIVLDAEPIFGAIYRPFFNE 197
>AL032655-8|CAH60799.1| 348|Caenorhabditis elegans Hypothetical
protein Y6B3B.5b protein.
Length = 348
Score = 33.1 bits (72), Expect = 0.22
Identities = 21/57 (36%), Positives = 31/57 (54%)
Frame = +2
Query: 575 IGIWIDPIDATFEFIAGVRGEAEPGKGLICVTVLIGAYLISTGEPIIGVINQPFANE 745
+ +++DP+DAT EF G+ VTV+ A ++ EPI G I +PF NE
Sbjct: 161 VRVFVDPLDATQEFTEGLTEY---------VTVM--ACIVLDAEPIFGAIYRPFFNE 206
>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
protein C09E7.8b protein.
Length = 1080
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 270 ISESNIRFNKDYKTVADVLVQETIKANIEKAFPELKNQVRGEE 398
ISE I+ + KTV + ++TI N+ +LK+Q+ E+
Sbjct: 704 ISELEIQLKSELKTVQHLKKEQTISCNLTNEITKLKDQIEREK 746
>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
protein C09E7.8a protein.
Length = 1114
Score = 31.1 bits (67), Expect = 0.89
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 270 ISESNIRFNKDYKTVADVLVQETIKANIEKAFPELKNQVRGEE 398
ISE I+ + KTV + ++TI N+ +LK+Q+ E+
Sbjct: 738 ISELEIQLKSELKTVQHLKKEQTISCNLTNEITKLKDQIEREK 780
>AC024761-2|AAF59463.1| 174|Caenorhabditis elegans Hypothetical
protein Y38C1AA.9 protein.
Length = 174
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +3
Query: 246 RIIVAEKDISESNIRFNKDYKTVADVL-VQETIKANIEKAFPELKNQVRGEESSE 407
+ I E +IS+ D K D +QE +KA ++KA LK R E E
Sbjct: 36 KTISGEVEISDVEAEEKTDKKREVDANDIQEEVKAELDKAVESLKETAREREEEE 90
>U00050-3|AAL02480.1| 556|Caenorhabditis elegans Hypothetical
protein F09F7.5c protein.
Length = 556
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 393 EESSEINGQVIVLKNFDHTVELLSQLIPP 479
EE+SEI+ Q +V ++ HT + + + PP
Sbjct: 151 EETSEISEQPVVFRSISHTSNISTHIAPP 179
>U00050-2|AAL02479.1| 582|Caenorhabditis elegans Hypothetical
protein F09F7.5b protein.
Length = 582
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 393 EESSEINGQVIVLKNFDHTVELLSQLIPP 479
EE+SEI+ Q +V ++ HT + + + PP
Sbjct: 150 EETSEISEQPVVFRSISHTSNISTHIAPP 178
>U00050-1|AAA50697.1| 583|Caenorhabditis elegans Hypothetical
protein F09F7.5a protein.
Length = 583
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +3
Query: 393 EESSEINGQVIVLKNFDHTVELLSQLIPP 479
EE+SEI+ Q +V ++ HT + + + PP
Sbjct: 151 EETSEISEQPVVFRSISHTSNISTHIAPP 179
>Z79596-4|CAB01856.2| 554|Caenorhabditis elegans Hypothetical
protein C02C6.2b protein.
Length = 554
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 231 QYTKRRIIVAEKDISESNIRFNKDY--KTVADVLVQETIKANIEKAFPEL 374
Q RR++ K ++ I+ K+Y KTV L+ T+ +I AFP L
Sbjct: 235 QIRARRVVRNVKSLAAQTIKVCKNYATKTVVTGLIDLTVLLSISFAFPAL 284
>Z79596-3|CAI79132.1| 561|Caenorhabditis elegans Hypothetical
protein C02C6.2a protein.
Length = 561
Score = 28.7 bits (61), Expect = 4.8
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 231 QYTKRRIIVAEKDISESNIRFNKDY--KTVADVLVQETIKANIEKAFPEL 374
Q RR++ K ++ I+ K+Y KTV L+ T+ +I AFP L
Sbjct: 242 QIRARRVVRNVKSLAAQTIKVCKNYATKTVVTGLIDLTVLLSISFAFPAL 291
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,966,579
Number of Sequences: 27780
Number of extensions: 291093
Number of successful extensions: 887
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 829
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 884
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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