Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1414
         (761 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    26   0.44 
DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.               22   7.1  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.4  

>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 25.8 bits (54), Expect = 0.44
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 400 LSSPLTWFFSSGKAFSIFAFIVSCTRTSATVL*SLLKR 287
           L S L+  F+SGK   +F  I+ C+    T L  L+++
Sbjct: 131 LRSRLSPIFTSGKLKEMFYLIIECSLNLETYLDKLIEK 168


>DQ435325-1|ABD92640.1|  160|Apis mellifera OBP7 protein.
          Length = 160

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +3

Query: 228 EQYTKRRIIVAEKDISESNIR 290
           + + K + ++ E+DISE NI+
Sbjct: 49  KDFIKMQELLQEEDISEGNIK 69


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/41 (24%), Positives = 21/41 (51%)
 Frame = +3

Query: 234 YTKRRIIVAEKDISESNIRFNKDYKTVADVLVQETIKANIE 356
           Y    + + E+  +  N + N+ YK+  + + +ET   N+E
Sbjct: 431 YRNNDLSINEEKRTIENEQLNRMYKSYPNYIDKETKDMNLE 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,213
Number of Sequences: 438
Number of extensions: 3704
Number of successful extensions: 16
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)