Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1413
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    29   0.85 
SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    26   4.5  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   7.9  
SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual         25   7.9  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   7.9  

>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 28.7 bits (61), Expect = 0.85
 Identities = 19/76 (25%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
 Frame = -1

Query: 685 IFLALFTFSVLLNIMHSGFFGL----IRVRVEMFFGHCHXQTIFQLLNFV-----LVYSQ 533
           +FL  F F  +  + +  ++GL      + + +F  HC  +      ++      +++S 
Sbjct: 116 MFLLAFPFQKIFALGYLRWYGLGVYLYSILILLFLSHCVLRCCLSNWSWTHRAMFILHSM 175

Query: 532 EIYVNMHSYRVVNIGW 485
            I + +HSY VVN GW
Sbjct: 176 VILMKLHSYNVVN-GW 190


>SPAC607.06c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 612

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/28 (46%), Positives = 21/28 (75%)
 Frame = +1

Query: 544 LIQSLTAEKLFXSGNGRKTFQLEHESTQ 627
           L Q+ TAE ++ +G GR++F++E ES Q
Sbjct: 133 LWQAFTAECMYRNGYGRRSFRIE-ESVQ 159



 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 4/75 (5%)
 Frame = +2

Query: 299 WDVHNGEFKAIIELKHGENVIELEYTEQQRRKFILDYTPRKTNLRVTPVYIICQGHDGCF 478
           W V +  FKAII +  G+N I     +  + +  + Y     N      +I+ +  D  F
Sbjct: 51  WVVTDLYFKAIIHVVPGDNTILFTTDDGGKLELQVYYQLLVDNPFYCIAFIVGKDSDLSF 110

Query: 479 QSP----SDIDNSIR 511
            +P    +DID  IR
Sbjct: 111 DAPHGAKNDIDEGIR 125


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 599 HFNSNTNQPKETRMHNIQEYAKCEQS*KNET 691
           H NS  N PK+    N+ E    E+S KNET
Sbjct: 29  HLNSFKNDPKKELNSNLNE-KSVEESSKNET 58


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
           Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/56 (25%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +3

Query: 42  PPAPTVLPPRRLCALHTNSIMVMDNRTSYDSENE---QNSSIFVTNFQNGDSVNYS 200
           PPAP+++ P      ++N++ V  N+ S  + +     N+    +  +NG  +N S
Sbjct: 150 PPAPSMVHPHTNTNANSNNLKVYANQLSQQNTSNPTYHNAYDMASMMKNGSRMNNS 205


>SPBC887.16 |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 109

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = -1

Query: 658 VLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQLLNFVLVYSQEIY 524
           +L+ ++      L +   +  F + H   +F LLNF+L +   +Y
Sbjct: 51  LLMQVVEREAITLAKTEFKNSFSNLHFFFLFWLLNFILFFRIHLY 95


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -2

Query: 390 RRCCSVYSSSITFSPCFNSIIALNS 316
           ++   +Y  +  F PC N +I LNS
Sbjct: 268 KKLLGLYELNTLFPPCLNKLIQLNS 292


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,014,570
Number of Sequences: 5004
Number of extensions: 65372
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)