Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1413
         (700 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659           29   2.7  
10_01_0053 - 767131-767962,768517-769037,769384-769601,769720-76...    28   6.2  
01_06_0685 - 31218716-31218873,31218974-31219266,31219366-312195...    28   6.2  
01_05_0529 + 22982859-22983041,22983146-22983597,22983598-22983892     28   8.2  

>07_01_0904 + 7609863-7610198,7610320-7610415,7610564-7610659
          Length = 175

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 24  RIADVAPPAPTVLPPRRLCALHTNSIMVMDNRTSYDSENEQNSSIFVT 167
           R+     P+ T+LP  R+  LH  ++M   NRT+Y   +     +FV+
Sbjct: 20  RLVSTVMPSVTLLP--RILFLHPTTVMFHMNRTNYQLIDISEDGLFVS 65


>10_01_0053 -
           767131-767962,768517-769037,769384-769601,769720-769825,
           769958-770017
          Length = 578

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -2

Query: 405 SKINFRRCCSVYSSSITFSPCFNSIIALNSPLWTSH-CVLLCVPLFVIEQITFLGYYSL 232
           SK+N  R  S +S +   +P F + +A     W  +  VL  +P++++  +T +   SL
Sbjct: 83  SKVNAARNSSAWSGACYLTPLFGAFLA--DTYWGKYRTVLTFLPIYILGLLTLMASTSL 139


>01_06_0685 -
           31218716-31218873,31218974-31219266,31219366-31219559,
           31219666-31220409,31221504-31221824
          Length = 569

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 12  LANGRIADVAPPAPTVLPPRR 74
           LA   + + APPAP V PP R
Sbjct: 42  LAASAVTEAAPPAPVVAPPAR 62


>01_05_0529 + 22982859-22983041,22983146-22983597,22983598-22983892
          Length = 309

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/54 (22%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +2

Query: 242 YPRKVICSITNNGTQSKTQWDVHNGEFKAIIEL-KHGENVIELEYTEQQRRKFI 400
           YP+ +   + +     +  WDV  G  +A I + +H ++V+  + + +Q R+ +
Sbjct: 30  YPKDLFVKLASLTAHHRVAWDVGTGNGQAAIGVAEHYDSVVATDVSAEQLRRAV 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,989,336
Number of Sequences: 37544
Number of extensions: 393615
Number of successful extensions: 1018
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 980
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1017
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)