Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1413
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59641| Best HMM Match : PAE (HMM E-Value=0)                         43   2e-04
SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)                       33   0.29 
SB_30963| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.68 
SB_6057| Best HMM Match : ig (HMM E-Value=7.3e-06)                     30   2.1  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   8.4  

>SB_59641| Best HMM Match : PAE (HMM E-Value=0)
          Length = 1252

 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 42/73 (57%), Gaps = 4/73 (5%)
 Frame = +2

Query: 281 TQSK-TQWDVHNGEFKAIIELKHGENVIELEYT---EQQRRKFILDYTPRKTNLRVTPVY 448
           T++K T+W + +  FKA++ L  G N+++++     E + ++  L Y P +    V  VY
Sbjct: 127 TRTKCTKWPIVDDAFKALVVLIPGSNLLKVKVCLDGEWRHKELSLIYQPLQLERFVRVVY 186

Query: 449 IICQGHDGCFQSP 487
           I C+  DG FQ+P
Sbjct: 187 IKCRDSDGTFQAP 199


>SB_41405| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 2639

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 21/71 (29%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
 Frame = -1

Query: 646  IMHSGFFGLIRVRVEMFFGHCHXQTIFQLLNFVLVYSQEIYVNMHSYRVVN--IGWTLKT 473
            + H+GFFGL R   + F G C    I  L + +   S+ + ++  + R VN  + + +K 
Sbjct: 1786 LCHAGFFGLFRSLHKAFGGKCDGNRIENLKSTLTDISKALRLSQSTTRAVNGKVVYLIK- 1844

Query: 472  TVMALANNVDR 440
            TV ++A  ++R
Sbjct: 1845 TVDSMATKLNR 1855


>SB_30963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 416

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 398 ILDYTPRKTNLRVTPVYIICQGHDGCFQSPSDIDNSIRVHVY 523
           ++DY  +KT +   P + IC   D C  SP D     RV+VY
Sbjct: 156 VMDYARQKTLIVSAPAFRICAEAD-CRNSPHDTQTVGRVYVY 196


>SB_6057| Best HMM Match : ig (HMM E-Value=7.3e-06)
          Length = 814

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 22/72 (30%), Positives = 33/72 (45%)
 Frame = +3

Query: 12  LANGRIADVAPPAPTVLPPRRLCALHTNSIMVMDNRTSYDSENEQNSSIFVTNFQNGDSV 191
           +A+   A +  P+PT+L    L +LH ++    +N TSY       S  F        S 
Sbjct: 407 IASSTFAAIFTPSPTILASATLSSLHPSNSSFPNNCTSYTKHTVVKSYNF--------SY 458

Query: 192 NYSVVLLKGIIT 227
              ++LL GIIT
Sbjct: 459 VSVILLLSGIIT 470


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 129 DSENEQNSSIFVTNFQNGDSVNYSVVLL 212
           D + + N +I + NF + D V YSV+++
Sbjct: 12  DYDGDDNGNIDINNFDHHDDVGYSVIMI 39


>SB_7607| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2499

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 311 NGEFKAIIELKHGENVIELEYTEQQRR 391
           NG FKA+ EL  G+NV+  +  E   +
Sbjct: 9   NGAFKAVFELPKGKNVVSYKEDENMSK 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,756,368
Number of Sequences: 59808
Number of extensions: 494051
Number of successful extensions: 1272
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1271
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)