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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1413
         (700 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical pr...    29   4.2  
Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U00044-4|AAY44000.1|  212|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe...    28   7.4  
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel...    28   7.4  
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel...    28   7.4  
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel...    28   7.4  
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel...    28   7.4  
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag...    28   7.4  
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu...    28   7.4  
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu...    28   7.4  
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu...    28   7.4  
AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical...    28   7.4  
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen...    28   7.4  

>Z48045-5|CAD56564.1|  374|Caenorhabditis elegans Hypothetical
           protein C41C4.7b protein.
          Length = 374

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 371 TQVQSHFLHVLIQLLP*TLHYGHPIAFY 288
           T ++SHFL +LIQ++  T  +   I+FY
Sbjct: 118 TVIRSHFLAILIQIVGWTYFFAWSISFY 145


>Z48045-4|CAA88102.2|  404|Caenorhabditis elegans Hypothetical
           protein C41C4.7a protein.
          Length = 404

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -3

Query: 371 TQVQSHFLHVLIQLLP*TLHYGHPIAFY 288
           T ++SHFL +LIQ++  T  +   I+FY
Sbjct: 118 TVIRSHFLAILIQIVGWTYFFAWSISFY 145


>U00044-4|AAY44000.1|  212|Caenorhabditis elegans Hypothetical
           protein K04C2.7 protein.
          Length = 212

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = -2

Query: 345 CFNSIIALNSPLWTSHCV-----LLCVPLFVIEQITFLGYYSLNV 226
           CF  +IAL   +WT+ C+     LL  P+ +I+     G   L +
Sbjct: 105 CFTQMIALTLTIWTTLCIPKPHPLLLWPMLIIQNAYCFGLVILTI 149


>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform f protein.
          Length = 1418

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform c protein.
          Length = 1852

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform a protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform d protein.
          Length = 1885

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
           alpha subunitprotein 1, isoform e protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
           sensitive calciumchannel alpha1 subunit isoform D
           protein.
          Length = 1844

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
           channel alpha1 subunitisoform C protein.
          Length = 1852

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
           channel alpha1 subunitisoform B protein.
          Length = 1885

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
           channel alpha1 subunitisoform A protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


>AL117204-35|CAB55154.2|  861|Caenorhabditis elegans Hypothetical
           protein Y116A8C.14 protein.
          Length = 861

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -1

Query: 688 FIFLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQLLNFVL 545
           ++F++   FS+LL+I+   FFG +++    +  H +   +FQ  N  L
Sbjct: 807 YVFISAIVFSILLSILLVVFFGNVKIDCP-WCTHFNCLPVFQCHNLGL 853


>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans
           voltage-dependent calcium channelalpha13 subunit
           protein.
          Length = 1837

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -1

Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
           F ALF   +LL I+ SG FG +     +F G     ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,958,185
Number of Sequences: 27780
Number of extensions: 376251
Number of successful extensions: 984
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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