BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1413 (700 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z48045-5|CAD56564.1| 374|Caenorhabditis elegans Hypothetical pr... 29 4.2 Z48045-4|CAA88102.2| 404|Caenorhabditis elegans Hypothetical pr... 29 4.2 U00044-4|AAY44000.1| 212|Caenorhabditis elegans Hypothetical pr... 28 5.6 U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe... 28 7.4 U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 28 7.4 U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 28 7.4 U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 28 7.4 U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 28 7.4 AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 28 7.4 AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 28 7.4 AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 28 7.4 AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 28 7.4 AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical... 28 7.4 AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 28 7.4 >Z48045-5|CAD56564.1| 374|Caenorhabditis elegans Hypothetical protein C41C4.7b protein. Length = 374 Score = 28.7 bits (61), Expect = 4.2 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -3 Query: 371 TQVQSHFLHVLIQLLP*TLHYGHPIAFY 288 T ++SHFL +LIQ++ T + I+FY Sbjct: 118 TVIRSHFLAILIQIVGWTYFFAWSISFY 145 >Z48045-4|CAA88102.2| 404|Caenorhabditis elegans Hypothetical protein C41C4.7a protein. Length = 404 Score = 28.7 bits (61), Expect = 4.2 Identities = 12/28 (42%), Positives = 19/28 (67%) Frame = -3 Query: 371 TQVQSHFLHVLIQLLP*TLHYGHPIAFY 288 T ++SHFL +LIQ++ T + I+FY Sbjct: 118 TVIRSHFLAILIQIVGWTYFFAWSISFY 145 >U00044-4|AAY44000.1| 212|Caenorhabditis elegans Hypothetical protein K04C2.7 protein. Length = 212 Score = 28.3 bits (60), Expect = 5.6 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%) Frame = -2 Query: 345 CFNSIIALNSPLWTSHCV-----LLCVPLFVIEQITFLGYYSLNV 226 CF +IAL +WT+ C+ LL P+ +I+ G L + Sbjct: 105 CFTQMIALTLTIWTTLCIPKPHPLLLWPMLIIQNAYCFGLVILTI 149 >U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel, alpha subunitprotein 1, isoform f protein. Length = 1418 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 >U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel, alpha subunitprotein 1, isoform c protein. Length = 1852 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 >U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel, alpha subunitprotein 1, isoform a protein. Length = 1837 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 >U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel, alpha subunitprotein 1, isoform d protein. Length = 1885 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 >U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel, alpha subunitprotein 1, isoform e protein. Length = 1844 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 >AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage sensitive calciumchannel alpha1 subunit isoform D protein. Length = 1844 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 >AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium channel alpha1 subunitisoform C protein. Length = 1852 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 >AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium channel alpha1 subunitisoform B protein. Length = 1885 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 >AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium channel alpha1 subunitisoform A protein. Length = 1837 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 >AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical protein Y116A8C.14 protein. Length = 861 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/48 (29%), Positives = 27/48 (56%) Frame = -1 Query: 688 FIFLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQLLNFVL 545 ++F++ FS+LL+I+ FFG +++ + H + +FQ N L Sbjct: 807 YVFISAIVFSILLSILLVVFFGNVKIDCP-WCTHFNCLPVFQCHNLGL 853 >AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-dependent calcium channelalpha13 subunit protein. Length = 1837 Score = 27.9 bits (59), Expect = 7.4 Identities = 14/41 (34%), Positives = 21/41 (51%) Frame = -1 Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560 F ALF +LL I+ SG FG + +F G ++ +L Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,958,185 Number of Sequences: 27780 Number of extensions: 376251 Number of successful extensions: 984 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 933 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 984 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1613473434 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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