Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1413
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48045-5|CAD56564.1| 374|Caenorhabditis elegans Hypothetical pr... 29 4.2
Z48045-4|CAA88102.2| 404|Caenorhabditis elegans Hypothetical pr... 29 4.2
U00044-4|AAY44000.1| 212|Caenorhabditis elegans Hypothetical pr... 28 5.6
U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channe... 28 7.4
U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel... 28 7.4
U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel... 28 7.4
U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel... 28 7.4
U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel... 28 7.4
AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltag... 28 7.4
AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calciu... 28 7.4
AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calciu... 28 7.4
AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calciu... 28 7.4
AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical... 28 7.4
AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans voltage-depen... 28 7.4
>Z48045-5|CAD56564.1| 374|Caenorhabditis elegans Hypothetical
protein C41C4.7b protein.
Length = 374
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 371 TQVQSHFLHVLIQLLP*TLHYGHPIAFY 288
T ++SHFL +LIQ++ T + I+FY
Sbjct: 118 TVIRSHFLAILIQIVGWTYFFAWSISFY 145
>Z48045-4|CAA88102.2| 404|Caenorhabditis elegans Hypothetical
protein C41C4.7a protein.
Length = 404
Score = 28.7 bits (61), Expect = 4.2
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = -3
Query: 371 TQVQSHFLHVLIQLLP*TLHYGHPIAFY 288
T ++SHFL +LIQ++ T + I+FY
Sbjct: 118 TVIRSHFLAILIQIVGWTYFFAWSISFY 145
>U00044-4|AAY44000.1| 212|Caenorhabditis elegans Hypothetical
protein K04C2.7 protein.
Length = 212
Score = 28.3 bits (60), Expect = 5.6
Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
Frame = -2
Query: 345 CFNSIIALNSPLWTSHCV-----LLCVPLFVIEQITFLGYYSLNV 226
CF +IAL +WT+ C+ LL P+ +I+ G L +
Sbjct: 105 CFTQMIALTLTIWTTLCIPKPHPLLLWPMLIIQNAYCFGLVILTI 149
>U37548-10|AAR30210.1| 1418|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform f protein.
Length = 1418
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
>U37548-9|AAR25651.1| 1852|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform c protein.
Length = 1852
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
>U37548-8|AAM51534.1| 1837|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform a protein.
Length = 1837
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
>U37548-7|AAR25652.1| 1885|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform d protein.
Length = 1885
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
>U37548-6|AAR25653.1| 1844|Caenorhabditis elegans Calcium channel,
alpha subunitprotein 1, isoform e protein.
Length = 1844
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
>AY322480-1|AAP84337.1| 1844|Caenorhabditis elegans T-type voltage
sensitive calciumchannel alpha1 subunit isoform D
protein.
Length = 1844
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
>AY313900-1|AAP79883.1| 1852|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform C protein.
Length = 1852
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
>AY313899-1|AAP79882.1| 1885|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform B protein.
Length = 1885
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
>AY313898-1|AAP79881.1| 1837|Caenorhabditis elegans T-type calcium
channel alpha1 subunitisoform A protein.
Length = 1837
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
>AL117204-35|CAB55154.2| 861|Caenorhabditis elegans Hypothetical
protein Y116A8C.14 protein.
Length = 861
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = -1
Query: 688 FIFLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQLLNFVL 545
++F++ FS+LL+I+ FFG +++ + H + +FQ N L
Sbjct: 807 YVFISAIVFSILLSILLVVFFGNVKIDCP-WCTHFNCLPVFQCHNLGL 853
>AF368920-1|AAK53427.1| 1837|Caenorhabditis elegans
voltage-dependent calcium channelalpha13 subunit
protein.
Length = 1837
Score = 27.9 bits (59), Expect = 7.4
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -1
Query: 682 FLALFTFSVLLNIMHSGFFGLIRVRVEMFFGHCHXQTIFQL 560
F ALF +LL I+ SG FG + +F G ++ +L
Sbjct: 692 FTALFALEMLLKIIASGLFGYLADGFNLFDGGIVALSVLEL 732
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,958,185
Number of Sequences: 27780
Number of extensions: 376251
Number of successful extensions: 984
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 933
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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