Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1413
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.2  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   4.9  
AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          22   4.9  
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    21   8.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    21   8.5  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      21   8.5  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    21   8.5  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    21   8.5  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -1

Query: 457 ANNVDRCYP*IRFSRCVI 404
           A N D+C    +FSRCVI
Sbjct: 105 AKNEDKCLTAQKFSRCVI 122


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = +3

Query: 99  IMVMDNRTSYDSENEQNSSIFVTNFQNGDSVNY 197
           I  + N+T +++ N  N++    N+ N +  NY
Sbjct: 82  ISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNY 114


>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 54  TVLPPRRLCALHTNSIMVMDNRTSYDSEN 140
           T+ P R+L  LH ++ MV     +  SEN
Sbjct: 94  TIPPTRKLPPLHPHTAMVTHLPQTLTSEN 122


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/45 (22%), Positives = 18/45 (40%)
 Frame = -1

Query: 607 VEMFFGHCHXQTIFQLLNFVLVYSQEIYVNMHSYRVVNIGWTLKT 473
           ++++ G C       LL +  V      + M   R   I  ++KT
Sbjct: 283 IDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKT 327


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/45 (22%), Positives = 18/45 (40%)
 Frame = -1

Query: 607 VEMFFGHCHXQTIFQLLNFVLVYSQEIYVNMHSYRVVNIGWTLKT 473
           ++++ G C       LL +  V      + M   R   I  ++KT
Sbjct: 283 IDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKT 327


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/36 (25%), Positives = 16/36 (44%)
 Frame = +3

Query: 87  HTNSIMVMDNRTSYDSENEQNSSIFVTNFQNGDSVN 194
           H N  ++ + +T YD     NS  F+++       N
Sbjct: 103 HPNGKILRELQTDYDRRLHDNSPSFLSDHSRDQEQN 138


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
 Frame = -1

Query: 613 VRVEMFFGHCHXQTIFQLLN-FVLVY 539
           V+++ +FG     T F L+N F+ +Y
Sbjct: 1   VKIQKYFGKNFPSTSFILINYFIFLY 26


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 10/45 (22%), Positives = 18/45 (40%)
 Frame = -1

Query: 607 VEMFFGHCHXQTIFQLLNFVLVYSQEIYVNMHSYRVVNIGWTLKT 473
           ++++ G C       LL +  V      + M   R   I  ++KT
Sbjct: 222 IDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKNRFQKIAESMKT 266


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,701
Number of Sequences: 438
Number of extensions: 5450
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)