Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1413
         (700 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR...    31   0.97 
At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger) fa...    29   2.2  
At5g45050.2 68418.m05524 disease resistance protein-related simi...    29   3.0  
At5g45050.1 68418.m05523 disease resistance protein-related simi...    29   3.0  
At5g17890.1 68418.m02098 LIM domain-containing protein / disease...    28   5.2  
At5g55900.1 68418.m06970 sucrase-related similar to sucrase [Sol...    27   9.0  
At2g18360.1 68415.m02139 hydrolase, alpha/beta fold family prote...    27   9.0  

>At5g45260.1 68418.m05555 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1187

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 14/36 (38%), Positives = 25/36 (69%), Gaps = 2/36 (5%)
 Frame = +3

Query: 117 RTSYD--SENEQNSSIFVTNFQNGDSVNYSVVLLKG 218
           +++YD  S+NE+N  + +  F  G++VNY + LL+G
Sbjct: 380 KSTYDTLSDNEKNIFLDIACFFQGENVNYVIQLLEG 415


>At1g72220.1 68414.m08350 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger); similar to GI:4928397
           from [Arabidopsis thaliana] (Plant Mol. Biol. 40 (4),
           579-590 (1999))
          Length = 413

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 10/34 (29%), Positives = 22/34 (64%)
 Frame = +3

Query: 114 NRTSYDSENEQNSSIFVTNFQNGDSVNYSVVLLK 215
           N+ +Y S+NE N ++    FQ+ + V++ + L++
Sbjct: 115 NQGTYQSDNEDNDTVMEEEFQDREQVDHPIWLIR 148


>At5g45050.2 68418.m05524 disease resistance protein-related similar
           to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
           profiles PF03106: WRKY DNA -binding domain, PF00931:
           NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1344

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +3

Query: 96  SIMVMDNRTSYDSENEQNSSIF--VTNFQNGDSVNYSVVLLKG 218
           +I V   ++SYD+ N++  +IF  +  F  G++V+Y + LL+G
Sbjct: 366 AIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEG 408


>At5g45050.1 68418.m05523 disease resistance protein-related similar
           to NL27 [Solanum tuberosum] GI:3947735; contains Pfam
           profiles PF03106: WRKY DNA -binding domain, PF00931:
           NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1372

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/43 (34%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +3

Query: 96  SIMVMDNRTSYDSENEQNSSIF--VTNFQNGDSVNYSVVLLKG 218
           +I V   ++SYD+ N++  +IF  +  F  G++V+Y + LL+G
Sbjct: 366 AIFVDAIKSSYDTLNDREKNIFLDIACFFQGENVDYVMQLLEG 408


>At5g17890.1 68418.m02098 LIM domain-containing protein / disease
           resistance protein-related low similarity to disease
           resistance protein RPP4 [Arabidopsis thaliana]
           GI:20270890; contains Pfam profiles PF00412: LIM domain,
           PF00931: NB-ARC domain, PF00560: Leucine Rich Repeat
          Length = 1613

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = +3

Query: 105 VMDNRTSYDSENEQNSSIFVTNFQNGDSVNYSVVLLK 215
           V+ N  S  S+NE+N  + +  F  G++VNY + LL+
Sbjct: 399 VLKNAYSALSDNEKNIVLDIAFFFKGETVNYVMQLLE 435


>At5g55900.1 68418.m06970 sucrase-related similar to sucrase
           [Solanum tuberosum] GI:1200257
          Length = 413

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 416 RKTNLRVTPVYIICQGHDGCFQSPSDI 496
           RK++++   +  IC+GHDG   S  D+
Sbjct: 107 RKSSMKKETLLTICEGHDGSETSNGDV 133


>At2g18360.1 68415.m02139 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 313

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = -2

Query: 378 SVYSSSITFSPCFNSIIALNSPLWTSHCVLLCVPLFVIEQITFLGY-YSLNVLLFL*EEQ 202
           SVY   + F     S  A  SP + +HC++  + +  IE+ T +G+ Y   V   + EE 
Sbjct: 91  SVYIPDLLFFGGSYSDNADRSPAFQAHCLVKSLRILGIEKFTLVGFSYGGMVAFKIAEEY 150

Query: 201 QNS*RCLHFESLLRKSMSSVRFQNHNSCGY 112
               + +     +     ++   N N  G+
Sbjct: 151 PEMVQAMVVSGSILAMTDTISESNLNQLGF 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,608,801
Number of Sequences: 28952
Number of extensions: 333029
Number of successful extensions: 764
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 764
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1496852856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)