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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1412
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical ...    28   5.7  
U97549-1|AAB52850.1|  128|Caenorhabditis elegans Hypothetical pr...    27   9.9  
U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine rece...    27   9.9  

>AL031633-3|CAD56609.1|  545|Caenorhabditis elegans Hypothetical
           protein Y39A1A.5 protein.
          Length = 545

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 632 FLPVLNLIFTKANPPIITTNIK 697
           FLP L  +  + NPP+I +N+K
Sbjct: 330 FLPTLIYVLFRGNPPLIQSNVK 351


>U97549-1|AAB52850.1|  128|Caenorhabditis elegans Hypothetical
           protein F15A8.4 protein.
          Length = 128

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 22/78 (28%), Positives = 35/78 (44%)
 Frame = +1

Query: 55  QTFR*TCRKYYKMVIQIARLICRHANIPKKRFLQTFEVYNLLCGSHCFQIFFLLPSET*S 234
           Q  R  C     +VI  A L C   N      L+TF    ++  +  F+ F+++ S+  S
Sbjct: 16  QQHRLRCAVKTTVVIISAYLACNLVNFILY-ILETFRRSWIIEANGAFKPFYVIISDLGS 74

Query: 235 NLNLVITTKHNLTYYDFN 288
           NL +  +T     YY +N
Sbjct: 75  NLFVFSSTIRIFIYYKYN 92


>U55365-5|AAN84867.2|  350|Caenorhabditis elegans Serpentine
           receptor, class e (epsilon)protein 11 protein.
          Length = 350

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +2

Query: 134 FPKNVSYKLLRFTIYFVEVIVFKYFFY 214
           FP   +Y  L F +Y ++ I F +FF+
Sbjct: 19  FPYLKNYLYLEFFLYIIDTIQFSFFFW 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,260,293
Number of Sequences: 27780
Number of extensions: 245847
Number of successful extensions: 545
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 545
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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