BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1412 (706 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AL031633-3|CAD56609.1| 545|Caenorhabditis elegans Hypothetical ... 28 5.7 U97549-1|AAB52850.1| 128|Caenorhabditis elegans Hypothetical pr... 27 9.9 U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine rece... 27 9.9 >AL031633-3|CAD56609.1| 545|Caenorhabditis elegans Hypothetical protein Y39A1A.5 protein. Length = 545 Score = 28.3 bits (60), Expect = 5.7 Identities = 10/22 (45%), Positives = 15/22 (68%) Frame = +2 Query: 632 FLPVLNLIFTKANPPIITTNIK 697 FLP L + + NPP+I +N+K Sbjct: 330 FLPTLIYVLFRGNPPLIQSNVK 351 >U97549-1|AAB52850.1| 128|Caenorhabditis elegans Hypothetical protein F15A8.4 protein. Length = 128 Score = 27.5 bits (58), Expect = 9.9 Identities = 22/78 (28%), Positives = 35/78 (44%) Frame = +1 Query: 55 QTFR*TCRKYYKMVIQIARLICRHANIPKKRFLQTFEVYNLLCGSHCFQIFFLLPSET*S 234 Q R C +VI A L C N L+TF ++ + F+ F+++ S+ S Sbjct: 16 QQHRLRCAVKTTVVIISAYLACNLVNFILY-ILETFRRSWIIEANGAFKPFYVIISDLGS 74 Query: 235 NLNLVITTKHNLTYYDFN 288 NL + +T YY +N Sbjct: 75 NLFVFSSTIRIFIYYKYN 92 >U55365-5|AAN84867.2| 350|Caenorhabditis elegans Serpentine receptor, class e (epsilon)protein 11 protein. Length = 350 Score = 27.5 bits (58), Expect = 9.9 Identities = 10/27 (37%), Positives = 16/27 (59%) Frame = +2 Query: 134 FPKNVSYKLLRFTIYFVEVIVFKYFFY 214 FP +Y L F +Y ++ I F +FF+ Sbjct: 19 FPYLKNYLYLEFFLYIIDTIQFSFFFW 45 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,260,293 Number of Sequences: 27780 Number of extensions: 245847 Number of successful extensions: 545 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 531 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 545 length of database: 12,740,198 effective HSP length: 79 effective length of database: 10,545,578 effective search space used: 1634564590 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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