Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1412
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10430.1 68416.m01251 F-box family protein contains F-box dom...    30   1.7  
At4g21000.1 68417.m03039 carbonic anhydrase family protein simil...    29   4.0  
At2g07300.1 68415.m00837 hypothetical protein                          28   5.2  

>At3g10430.1 68416.m01251 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 370

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +1

Query: 61  FR*TCRKYYKMVIQIARLICRHANIPKKRFLQ 156
           F+ TC+K+Y+++    R + +H +   KRFL+
Sbjct: 25  FKSTCKKWYELISNDKRFMYKHLDKSTKRFLR 56


>At4g21000.1 68417.m03039 carbonic anhydrase family protein similar
           to storage protein (dioscorin) [Dioscorea cayenensis]
           GI:433463; contains Pfam profile PF00194:
           Eukaryotic-type carbonic anhydrase
          Length = 260

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/35 (34%), Positives = 24/35 (68%)
 Frame = -1

Query: 151 RNVFWEY*HVYKLVLRFVSPFCNIFYMFI*MFVSM 47
           + V + +   Y+L++ FV+P+ NIF++F+ +F  M
Sbjct: 225 KRVLYFFCFCYRLII-FVTPYINIFWIFVFVFWCM 258


>At2g07300.1 68415.m00837 hypothetical protein 
          Length = 219

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +1

Query: 166 VYNLLCGSHCFQIFFLLPSET*SNLNLVITTKHNLTYYD 282
           +Y  +   H F++  +L  E    + + I T+ +  YYD
Sbjct: 26  IYKKMLNDHSFELHLILQDEAGKRIEVTIGTRFSAFYYD 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,978,985
Number of Sequences: 28952
Number of extensions: 206233
Number of successful extensions: 373
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 368
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 373
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)