Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1411
         (807 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    32   0.083
SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...    28   1.8  
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...    28   1.8  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   3.1  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    27   4.1  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.5  

>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 32.3 bits (70), Expect = 0.083
 Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
 Frame = +3

Query: 153 DDTLNNDYVSNIQCRIY*CKTSQSYLPH-FISILDSKALPVIWVTV*GFRCRFYSNRHYM 329
           D +L++ ++SN++ +++  K S   L   F SI +S +L   W T   FR  FY     +
Sbjct: 215 DTSLDSKFLSNVKTKVFNMKASTEILESLFTSIEESLSLKFGWRTRRFFRSMFYERSWSV 274

Query: 330 CKCISKIR 353
            + I  IR
Sbjct: 275 ERVIECIR 282


>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = -2

Query: 662 KCFTTEVFLKYCEWYRVFDVSSIKSYTFNLNLTYSY------ELSNESPHQNPRLSWIAP 501
           +C   E   +YC   RV     + SY  N + TY +      + S+++  ++PR++WI  
Sbjct: 99  RCTAEERVGRYCSNLRV-----LNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVN 153

Query: 500 TITKRFKSTVLKS 462
            + K  +S  L S
Sbjct: 154 PVHKHRESRGLTS 166


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 6/73 (8%)
 Frame = -2

Query: 662 KCFTTEVFLKYCEWYRVFDVSSIKSYTFNLNLTYSY------ELSNESPHQNPRLSWIAP 501
           +C   E   +YC   RV     + SY  N + TY +      + S+++  ++PR++WI  
Sbjct: 99  RCTAEERVGRYCSNLRV-----LNSYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVN 153

Query: 500 TITKRFKSTVLKS 462
            + K  +S  L S
Sbjct: 154 PVHKHRESRGLTS 166


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -3

Query: 733 INCLAYVNDGKSFGMLTLSYVLIESALPLRSF*NTANGIGFLTYRV 596
           +N  A+ ND K       S  L+ES L  RSF +  NG  +   RV
Sbjct: 423 LNKTAFFNDSKPDFRQLFSQTLVESKLQNRSFADIINGSRYNIDRV 468


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   LPRPSEPKPTSPARGAPCRPTNEALARR 87
           + +  EP P S A  +P + + EALA R
Sbjct: 59  IQKKKEPSPASSASASPVKKSAEALAER 86


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 289 KALGVDFILIVIICVNVSPKYGSDTLINL 375
           K LG+DF + +++C     +YGS+ L +L
Sbjct: 147 KELGIDFPVNLLMCFEGMEEYGSEGLEDL 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,088,890
Number of Sequences: 5004
Number of extensions: 59748
Number of successful extensions: 152
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)