Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1411
         (807 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g07770.1 68416.m00947 heat shock protein-related strong simil...    28   6.3  
At2g06860.1 68415.m00768 Ulp1 protease family protein contains P...    28   6.3  
At2g46060.1 68415.m05729 transmembrane protein-related contains ...    28   8.4  

>At3g07770.1 68416.m00947 heat shock protein-related strong
           similarity to heat-shock protein [Secale cereale]
           GI:556673; contains Pfam profiles PF02518: ATPase,
           histidine kinase-, DNA gyrase B-, and HSP90-like domain
           protein, PF00183: Hsp90 protein
          Length = 803

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/71 (23%), Positives = 32/71 (45%)
 Frame = -2

Query: 695 WNANAELCAN*KCFTTEVFLKYCEWYRVFDVSSIKSYTFNLNLTYSYELSNESPHQNPRL 516
           W+AN E     +     + L Y +  RVF+++   S   N+N  Y+   ++E   +   L
Sbjct: 674 WSANMERLMKAQSTGDTISLDYMKGRRVFEINPDHSIIKNINAAYNSNPNDEDAMRAIDL 733

Query: 515 SWIAPTITKRF 483
            + A  ++  F
Sbjct: 734 MYDAALVSSGF 744


>At2g06860.1 68415.m00768 Ulp1 protease family protein contains Pfam
           profile PF02902: Ulp1 protease family, C-terminal
           catalytic domain
          Length = 938

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = +3

Query: 381 LSQVSGVNVSPKNTGDTRIVINYDYYN*FKHSTF 482
           +S V+G   SPK +GD   V  Y YY    H TF
Sbjct: 483 ISSVTGAVTSPKLSGDNEEVSCYPYYQ--NHYTF 514


>At2g46060.1 68415.m05729 transmembrane protein-related contains
           weak similarity to Swiss-Prot:Q9HCN3 transmembrane
           protein 8 precursor (M83 protein) [Homo sapiens]
          Length = 807

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = +1

Query: 613 TLYHSQYF---KKTSVVKHFQLAHNSALAFQMT 702
           T+Y S +F    K ++V H  LAHN A  +++T
Sbjct: 767 TIYTSSFFFLCSKIAIVNHENLAHNGADNYELT 799


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,530,054
Number of Sequences: 28952
Number of extensions: 292808
Number of successful extensions: 733
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 733
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1833827200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)