Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1410
         (835 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1577 - 27869596-27869682,27869769-27869869,27869956-278699...    30   2.6  
09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222           29   4.6  
01_06_0241 - 27813076-27813622,27813695-27814125                       29   4.6  
01_01_0829 + 6471032-6471870,6472490-6472685,6472772-6472956,647...    29   4.6  
06_03_0165 - 17399535-17400178,17400378-17400522                       29   6.0  
10_06_0110 + 10889414-10889669,10889756-10889806,10890595-108911...    28   8.0  
09_04_0276 - 16306894-16307526,16307556-16308572                       28   8.0  

>07_03_1577 -
           27869596-27869682,27869769-27869869,27869956-27869995,
           27870879-27870953
          Length = 100

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 112 DLKSQLEGFNTSCLRDVDTNEKIVL 186
           DL+S+L+  NT CL + + N+K+++
Sbjct: 54  DLQSKLDAVNTECLAEKEKNKKLII 78


>09_02_0479 - 9753161-9753171,9755260-9755547,9755883-9756222
          Length = 212

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 119 RVSSKASTPAVSVTSTPMKRLCFR 190
           +VSS++S+P  SVT+  ++ +CFR
Sbjct: 72  QVSSQSSSPVESVTTATLRPICFR 95


>01_06_0241 - 27813076-27813622,27813695-27814125
          Length = 325

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
 Frame = +2

Query: 254 IEPAEAHRDSGEEPASGQRCYRSGEGKEQIPERHRELRS-H*AEAHGNVREEPAPHK 421
           +EP   H  + ++     R +R+     ++ + HR  RS H A  +  V +    H+
Sbjct: 22  VEPEANHESANQQSHHSNRSHRTASRNAEVEQPHRSNRSHHTASRNAEVEQSHCSHR 78


>01_01_0829 +
           6471032-6471870,6472490-6472685,6472772-6472956,
           6473206-6473539,6473629-6473833,6474927-6475033,
           6475117-6475269
          Length = 672

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 74  TLPP*KTSPRSPQT*RVSSKASTPAVSVTST 166
           TLPP + SP SP T   SSK  TP+ S  S+
Sbjct: 31  TLPPGRLSPVSPLTHSSSSKLPTPSSSSGSS 61


>06_03_0165 - 17399535-17400178,17400378-17400522
          Length = 262

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/36 (38%), Positives = 17/36 (47%)
 Frame = +1

Query: 568 YNGNTAWAMATYSNPGFYSNPNDKSRLTPINSEWTP 675
           ++G   W   T    G YS   D +RLT I SE  P
Sbjct: 221 FSGEYRWCYPTPVREGIYSLATDANRLTTIFSEENP 256


>10_06_0110 +
           10889414-10889669,10889756-10889806,10890595-10891163,
           10891178-10891660,10891747-10891944,10893300-10893354,
           10893372-10893631
          Length = 623

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 4/73 (5%)
 Frame = +2

Query: 95  SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLLKTSPL----RRPRSLYSTVSRSLIEP 262
           SP +      SS    P +++ + P  R       + PL    R  R   + V+R  IEP
Sbjct: 10  SPEANTLSPTSSPLPLPPITIHAPPFTRALHHAASSFPLLSQHRSHRWKGAAVARIGIEP 69

Query: 263 AEAHRDSGEEPAS 301
           A   R   EEP S
Sbjct: 70  AMGRRQQPEEPDS 82


>09_04_0276 - 16306894-16307526,16307556-16308572
          Length = 549

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 705 YTNYLY*IGLWRPLAVYWRKAR 640
           +T Y Y   LW P   YWR+AR
Sbjct: 111 HTTYNYTDILWSPYGAYWRQAR 132


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,065,312
Number of Sequences: 37544
Number of extensions: 463928
Number of successful extensions: 1335
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1288
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1334
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)