Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1410
(835 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46525| Best HMM Match : Thymosin (HMM E-Value=0) 68 8e-12
SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9) 36 0.041
SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14) 30 2.0
SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.0
SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05) 30 2.0
SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91) 30 2.7
SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26) 29 3.5
SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_46951| Best HMM Match : CUB (HMM E-Value=1.3e-32) 29 6.1
SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05) 29 6.1
SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0) 29 6.1
SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_52732| Best HMM Match : M (HMM E-Value=0.019) 28 8.1
>SB_46525| Best HMM Match : Thymosin (HMM E-Value=0)
Length = 750
Score = 68.1 bits (159), Expect = 8e-12
Identities = 33/65 (50%), Positives = 43/65 (66%)
Frame = +3
Query: 255 SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIE 434
+S+LKH E QEKNPLP KD I E + + ++ FD +KLKH +T EKNPLP I
Sbjct: 688 ASKLKHVEVQEKNPLPTKDDITTESTETRA--EVKTFDHSKLKHVQTEEKNPLPDAKTIA 745
Query: 435 QEKSA 449
QEK++
Sbjct: 746 QEKAS 750
Score = 65.3 bits (152), Expect = 6e-11
Identities = 33/61 (54%), Positives = 38/61 (62%)
Frame = +3
Query: 258 SQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQ 437
S+L+H ET+EKN LP KD I EK F +G+E F KLKH ET EKNPLP I
Sbjct: 460 SKLQHVETKEKNTLPTKDTIADEKRTAPF-SGVEVFQKNKLKHVETLEKNPLPDAQNIRA 518
Query: 438 E 440
E
Sbjct: 519 E 519
Score = 63.3 bits (147), Expect = 2e-10
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Frame = +3
Query: 258 SQLKHTETQEKNPLPDKDAIEAEKEKNKF--LNGIENFDPTKLKHTETCEKNPLPTKDVI 431
S+LKH ET EKNPLP ++ E ++ + +FD +KLKH E EKNPLPTKD I
Sbjct: 649 SKLKHVETVEKNPLPSAAVLKEEMRPEVLPDVSAVASFDASKLKHVEVQEKNPLPTKDDI 708
Query: 432 EQEKS 446
E +
Sbjct: 709 TTEST 713
Score = 62.9 bits (146), Expect = 3e-10
Identities = 30/65 (46%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
Frame = +3
Query: 255 SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFDPTKLKHTETCEKNPLPTKDV 428
++ LKH +T+EKN LP + I+ E + ++F + E +F+ +KL+H ET EKN LPTKD
Sbjct: 419 AANLKHVQTKEKNTLPSDETIKQELQPDEFPDRAEVKSFEKSKLQHVETKEKNTLPTKDT 478
Query: 429 IEQEK 443
I EK
Sbjct: 479 IADEK 483
Score = 62.9 bits (146), Expect = 3e-10
Identities = 34/63 (53%), Positives = 40/63 (63%), Gaps = 2/63 (3%)
Frame = +3
Query: 258 SQLKHTETQEKNPLPDKDAIEAEK--EKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVI 431
++LKH ET EKNPLPD I AE E + + FD +KLKH ET EK +PTKDVI
Sbjct: 497 NKLKHVETLEKNPLPDAQNIRAEMMPEVLPDRSEVAKFDTSKLKHVETKEKVVMPTKDVI 556
Query: 432 EQE 440
E E
Sbjct: 557 EAE 559
Score = 61.3 bits (142), Expect = 9e-10
Identities = 30/62 (48%), Positives = 42/62 (67%)
Frame = +3
Query: 255 SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIE 434
+S+LKH ET+EK +P KD IEAE ++ +++FD +KLKH T EKNPLPT +
Sbjct: 536 TSKLKHVETKEKVVMPTKDVIEAEAIDSRA--EVKSFDHSKLKHVVTQEKNPLPTPQTLH 593
Query: 435 QE 440
+E
Sbjct: 594 EE 595
Score = 56.4 bits (130), Expect = 3e-08
Identities = 26/61 (42%), Positives = 43/61 (70%)
Frame = +3
Query: 258 SQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQ 437
++LKH TQEK+ +P ++ I+ E ++ +++FD +KLKH ET EKNPLP+ V+++
Sbjct: 613 TKLKHVTTQEKSIMPSQEDIKEEAVDSRA--EVKSFDHSKLKHVETVEKNPLPSAAVLKE 670
Query: 438 E 440
E
Sbjct: 671 E 671
Score = 54.0 bits (124), Expect = 1e-07
Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Frame = +3
Query: 258 SQLKHTETQEKNPLPDKDAIEAEK-EKNK-FLNGIENFDPTKLKHTETCEKNPLPTKDVI 431
S+LKH TQEKNPLP + E KNK + + +FD TKLKH T EK+ +P+++ I
Sbjct: 573 SKLKHVVTQEKNPLPTPQTLHEELIPKNKPDRSEVASFDHTKLKHVTTQEKSIMPSQEDI 632
Query: 432 EQE 440
++E
Sbjct: 633 KEE 635
Score = 35.1 bits (77), Expect = 0.071
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +3
Query: 354 IENFDPTKLKHTETCEKNPLPTKDVIEQE 440
+ FD LKH +T EKN LP+ + I+QE
Sbjct: 414 VAKFDAANLKHVQTKEKNTLPSDETIKQE 442
Score = 33.9 bits (74), Expect = 0.16
Identities = 15/40 (37%), Positives = 28/40 (70%)
Frame = +1
Query: 94 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 213
+P+V D +S++ F+TS L+ V+T EK+V+P+ + + E
Sbjct: 521 MPEVLPD-RSEVAKFDTSKLKHVETKEKVVMPTKDVIEAE 559
Score = 31.5 bits (68), Expect = 0.87
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 94 LPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 213
+PK D +S++ F+ + L+ V T EK ++PS ED+ E
Sbjct: 597 IPKNKPD-RSEVASFDHTKLKHVTTQEKSIMPSQEDIKEE 635
>SB_45518| Best HMM Match : Prothymosin (HMM E-Value=0.9)
Length = 413
Score = 35.9 bits (79), Expect = 0.041
Identities = 18/53 (33%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Frame = +1
Query: 82 SLKDLPKVATDLKSQLEGFNTSCL-RDVDTNEKIVLPSAEDVATEKTQKSLFD 237
SLK L K+ TDL+S ++G ++ L ++V+ K+V + +T K + S F+
Sbjct: 333 SLKALAKICTDLESNIQGIKSNPLAKEVERTNKLVYEIFKKFSTSKVEASSFE 385
>SB_39938| Best HMM Match : ANF_receptor (HMM E-Value=6.4e-14)
Length = 966
Score = 30.3 bits (65), Expect = 2.0
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +2
Query: 287 EEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEP 409
EEP+ + +G KE+ E RE R H + V+EEP
Sbjct: 840 EEPSDEEESEEAGREKEEEEEDQREGRDHNDDEESVVKEEP 880
>SB_14617| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 598
Score = 30.3 bits (65), Expect = 2.0
Identities = 27/73 (36%), Positives = 33/73 (45%), Gaps = 5/73 (6%)
Frame = +2
Query: 152 SVTSTPMKRLCFRLLKTSPLRRPRSLYSTVS-RSLIE----PAEAHRDSGEEPASGQRCY 316
SVT T +RL R S L PRS+ T S R+L A R GEE G+ Y
Sbjct: 438 SVTGTFARRLVSRTTDASSLEDPRSVVVTSSPRTLGRISNGTTSARRVEGEEHVCGE--Y 495
Query: 317 RSGEGKEQIPERH 355
+ KE +P H
Sbjct: 496 KCSLCKEVVPPDH 508
>SB_58909| Best HMM Match : Renin_r (HMM E-Value=1.6e-05)
Length = 385
Score = 30.3 bits (65), Expect = 2.0
Identities = 20/48 (41%), Positives = 27/48 (56%)
Frame = -2
Query: 219 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLGEVFQGGS 76
GLL+GD+F R K N+ I VD T G + FEL + + E+ GS
Sbjct: 74 GLLAGDIFRRPKANILISVDGV-TKG-DKFELPAKASFPVQEMAGLGS 119
>SB_57255| Best HMM Match : Atrophin-1 (HMM E-Value=0.91)
Length = 1249
Score = 29.9 bits (64), Expect = 2.7
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 64 SVSDTPSLKDLPKVATDLKSQLEGFNTSCLRDV-DTNEKIVLPSAEDVAT 210
S SD P+ D A+D+KS + T DV T++ V PSA DV T
Sbjct: 617 SASDVPTTSDDQPSASDVKSTSDDQVTPPSSDVPTTSDDQVTPSASDVPT 666
>SB_20129| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 90
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = -2
Query: 219 GLLSGDVFSRRKHNLFIGVDVTETAGVEAFEL 124
GLL+GD+F R K N+ I VD T G + FEL
Sbjct: 51 GLLAGDIFRRPKANILISVDGV-TKG-DKFEL 80
>SB_55925| Best HMM Match : Homeobox (HMM E-Value=1e-26)
Length = 1064
Score = 29.5 bits (63), Expect = 3.5
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 12 ESSIPFLIKNILIHNGLLRE*HSLPERPPQGRHRPEESARRLQHQ 146
E S+PF N N ++ +P R PQG H + A+ +QH+
Sbjct: 224 EMSLPFKKHNTFRQNVDIK---GIPSRLPQGEHSDRKKAQEVQHK 265
>SB_14886| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1028
Score = 29.5 bits (63), Expect = 3.5
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 512 LM*VRSICVVHYKFYFCFCTMATLPG 589
L+ V IC VH FY+C C +++ G
Sbjct: 55 LVAVLRICSVHLDFYYCTCVWSSMAG 80
>SB_29288| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 275
Score = 29.1 bits (62), Expect = 4.6
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +3
Query: 267 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEK 404
+HTE + +P P K I+ E +++ + I+ KH+ +CE+
Sbjct: 212 RHTENAKSSPDPIKSEIDGEHSEDEKEHKIKVCPLVDKKHSHSCER 257
>SB_46951| Best HMM Match : CUB (HMM E-Value=1.3e-32)
Length = 194
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 487 LASIAVFYIDVSQIDLRRPLQVLFLFLYNGNTAWAMATYSNPGFYSNPNDKS 642
+ +IAVF I ++ + P + G A T+S+P F SN D +
Sbjct: 1 MTAIAVFGIIIAVVSAENPASTYYRGGCGGTITGASGTFSSPNFPSNYPDNA 52
>SB_44787| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 522
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 5/89 (5%)
Frame = +2
Query: 89 KTSPRSPQT*RVSSKAS-----TPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSRSL 253
+++P SP SS S +P SV + +K + +KT+P R + TVS L
Sbjct: 383 ESNPASPTGSTSSSDGSVYNPCSPDSSVLTNILKHPSGKEIKTTPYSRKNTKSDTVSPKL 442
Query: 254 IEPAEAHRDSGEEPASGQRCYRSGEGKEQ 340
PA+ R + + R YR + EQ
Sbjct: 443 KTPAQRQRKRVQNKDAATR-YRVKKKDEQ 470
>SB_7539| Best HMM Match : Sulfatase (HMM E-Value=3.5e-05)
Length = 492
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 214 SQWRRLQQTEAQSFHWCRRHGDSWC*SLRADSSGLWRPW 98
S WRRLQ+ A S + + D +L A+ G W PW
Sbjct: 419 SLWRRLQELNATSLEYRLQPEDPRSIAL-AERLGRWEPW 456
>SB_19734| Best HMM Match : RNA_pol_Rpb1_5 (HMM E-Value=0)
Length = 1452
Score = 28.7 bits (61), Expect = 6.1
Identities = 19/60 (31%), Positives = 26/60 (43%)
Frame = +3
Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
Q K E PD+D +E E+E NG+E+ D K + PT DV Q+
Sbjct: 843 QRKRLEQHASYEAPDEDEMEIERE---LQNGLESGDEDDTKADAQRSETNSPTLDVETQQ 899
>SB_1586| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 350
Score = 28.7 bits (61), Expect = 6.1
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = +2
Query: 206 PLRRPRSLYSTVSR--SLIEPAEAHRDSGEEPASGQ 307
P + PR+ S VSR S++ P+ H D P SGQ
Sbjct: 299 PFQVPRNSVSFVSRRASVLSPSPKHSDYSGRPTSGQ 334
>SB_52732| Best HMM Match : M (HMM E-Value=0.019)
Length = 1366
Score = 28.3 bits (60), Expect = 8.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = +1
Query: 85 LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATE 213
L DL +V +LKS+ EG CL D++ + DV E
Sbjct: 1125 LMDLSRVGEELKSENEGLQQKCL-DLEKQRDTIKQDLADVQKE 1166
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,540,586
Number of Sequences: 59808
Number of extensions: 539384
Number of successful extensions: 1564
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1418
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1554
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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