Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1410
         (835 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    56   3e-08
AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical...    30   1.8  
AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical...    29   5.4  
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ...    28   7.2  
AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical ...    28   7.2  
AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical ...    28   7.2  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 29/61 (47%), Positives = 39/61 (63%)
 Frame = +3

Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
           +LK  ET EKN LP K+ +  EK+  + ++ IE+FD TKL  T   EK  LP+ D I+QE
Sbjct: 23  ELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDIKQE 82

Query: 441 K 443
           K
Sbjct: 83  K 83



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 26/64 (40%), Positives = 37/64 (57%)
 Frame = +3

Query: 255 SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIE 434
           S++L  T  +EK  LP  D I+ EK+  +  + I NF    LK TET EKN LP+   + 
Sbjct: 59  STKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVA 118

Query: 435 QEKS 446
           +EK+
Sbjct: 119 REKT 122



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 24/59 (40%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
 Frame = +1

Query: 82  SLKDLPKVATDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFD 255
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE FD
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFD 58



 Score = 38.3 bits (85), Expect = 0.007
 Identities = 18/43 (41%), Positives = 25/43 (58%)
 Frame = +1

Query: 124 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF 252
           ++E F+++ L      EKIVLPSA+D+  EK    L D I  F
Sbjct: 53  EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNF 95



 Score = 33.9 bits (74), Expect = 0.14
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
 Frame = +1

Query: 79  PSLKDLP--KVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKT 219
           PS  D+   K   +L  ++  F +  L+  +T EK VLPS  DVA EKT
Sbjct: 74  PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122


>AF100307-11|AAC68929.1|  304|Caenorhabditis elegans Hypothetical
           protein T12B5.3 protein.
          Length = 304

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 543 ITSFIFVFVQWQHCLGNGDVQQPRILFKS*RQVAPYANKQRVDAINRSNTDN 698
           ITSFI  F++ + C+   ++   R+LF     + P+ N + ++ I  S TDN
Sbjct: 131 ITSFIN-FLKAKDCIHVKEIHFNRLLFDDILSILPFFNAKVLENIKLSETDN 181


>AL132865-13|CAB60609.1|  496|Caenorhabditis elegans Hypothetical
           protein Y62E10A.16 protein.
          Length = 496

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/40 (27%), Positives = 23/40 (57%)
 Frame = +2

Query: 443 ISLNHYFITVTRKCISLVSPYFILM*VRSICVVHYKFYFC 562
           + +N Y + + R C++  +PY + +  +S  V+HY+   C
Sbjct: 374 LHVNDYSVCIKRNCLNQKAPYSVNL--KSKHVLHYRLVIC 411


>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
           protein Y53F4B.9 protein.
          Length = 1168

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 125 SSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEP 295
           SS AS  A SVT T ++ +  + +  KT P  R +SL    +  L  PA+  +   EEP
Sbjct: 251 SSIASYSAESVTETALESVNTKSVESKTRPSSRRKSLILGAASPLKSPAKIEKPRLEEP 309


>AF022981-2|AAG24200.1|  236|Caenorhabditis elegans Hypothetical
           protein W03F9.2a protein.
          Length = 236

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
 Frame = +3

Query: 267 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIE--NFD 368
           KHTET+++ P  +K    A+K  N  L  +E  N+D
Sbjct: 192 KHTETEKEAPPQEKSVTNAQKPGNPALLSLESRNYD 227


>AC024819-3|AAF59587.2|  923|Caenorhabditis elegans Hypothetical
           protein Y55B1AL.3a protein.
          Length = 923

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 18/67 (26%), Positives = 32/67 (47%)
 Frame = +2

Query: 17  FYPLPHQKYIDSQWPAP*VTLPP*KTSPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL 196
           F P+P    + +   +     P   TSP+SP +   S++   P VSVTS P ++      
Sbjct: 19  FSPIPKFSRLRTPRTSREYVCPLKSTSPQSPSS---STENEPPPVSVTSPPARKRALEES 75

Query: 197 KTSPLRR 217
             +P+++
Sbjct: 76  TVTPIQQ 82


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,200,400
Number of Sequences: 27780
Number of extensions: 396982
Number of successful extensions: 1253
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1251
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2072006206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)