Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1410
         (835 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    29   0.053
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   4.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   8.0  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 29.1 bits (62), Expect = 0.053
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +2

Query: 209 LRRPRSLYSTVSRSLIEPAEAHRDSGEEPASGQR 310
           LRR R L +TV+R+ +     H DSG   ++ QR
Sbjct: 248 LRRSRMLTATVNRNHLSGGTNHWDSGRRKSAAQR 281


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +1

Query: 64  SVSDTPSLKDLPKVATDLKS 123
           SVS  PS+K + K ATD  S
Sbjct: 156 SVSCVPSVKHVAKCATDFSS 175


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +2

Query: 560 CFCTMATLPGQWRRTATPDFIQIL 631
           C C+M  LPG   +T+T ++ +I+
Sbjct: 684 CNCSMDWLPGINNQTSTREYPRIM 707


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 534 QIDLTYINIKYGDTSEI 484
           QIDL +IN   GD  EI
Sbjct: 172 QIDLKHINQNMGDKVEI 188


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,376
Number of Sequences: 438
Number of extensions: 5268
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26702940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)