Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1410
         (835 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g29210.1 68415.m03550 splicing factor PWI domain-containing p...    33   0.23 
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)...    33   0.31 
At2g02720.1 68415.m00214 pectate lyase family protein similar to...    31   0.94 
At4g36520.1 68417.m05185 trichohyalin-related low similarity to ...    31   1.2  
At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containi...    30   2.2  
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d...    29   3.8  
At4g31820.1 68417.m04522 phototropic-responsive NPH3 family prot...    29   5.0  
At1g23230.1 68414.m02906 expressed protein                             29   5.0  
At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase f...    28   6.6  
At3g28770.1 68416.m03591 expressed protein                             28   6.6  
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai...    28   6.6  
At1g51900.1 68414.m05850 hypothetical protein                          28   6.6  
At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative si...    28   8.8  
At3g43390.1 68416.m04592 hypothetical protein similar to At3g243...    28   8.8  

>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
           protein contains Pfam profile PF01480: PWI domain
          Length = 878

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 4/127 (3%)
 Frame = +2

Query: 2   LSARIFYPLPHQKYIDSQWPAP*VTLPP*KT----SPRSPQT*RVSSKASTPAVSVTSTP 169
           ++ R+  P P +  + S  PA  +  PP +     SP        ++   +P+ S  S P
Sbjct: 456 VAQRLPSPPPRRAGLPSPPPAQRLPSPPPRRAGLPSPMRIGGSHAANHLESPSPSSLSPP 515

Query: 170 MKRLCFRLLKTSPLRRPRSLYSTVSRSLIEPAEAHRDSGEEPASGQRCYRSGEGKEQIPE 349
            ++   ++L + P+RR RSL     R  +     H         G      G GK     
Sbjct: 516 GRK---KVLPSPPVRRRRSLTPDEERVSLSQGGRHTSPSHIKQDGSMSPVRGRGKSSPSS 572

Query: 350 RHRELRS 370
           RH++ RS
Sbjct: 573 RHQKARS 579


>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
           nearly identical to SF2/ASF-like splicing modulator
           Srp30 [Arabidopsis thaliana] GI:4775270
          Length = 268

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = +2

Query: 95  SPRSPQT*RVSSKASTPAVSVTSTPMKRLCFRLL--KTSPLRRPRSLYSTVSRSLIEPAE 268
           SP   ++ R  S++  P+ S +S        R +  ++ PL R RSLYS+VSRS      
Sbjct: 193 SPDDSKSYRSRSRSRGPSCSYSSKSRSVSPARSISPRSRPLSRSRSLYSSVSRSQSRSKS 252

Query: 269 AHRDSGEEPAS 301
             R     P S
Sbjct: 253 RSRSRSNSPVS 263


>At2g02720.1 68415.m00214 pectate lyase family protein similar to
           pectate lyase P59 SP:P15722 from [Lycopersicon
           esculentum]
          Length = 455

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = +3

Query: 267 KHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
           K    +E  P P+  +   + EK+ FLNG       K        KNP+P K  I  +
Sbjct: 375 KQVTKREYTPYPEWKSWNWQSEKDYFLNGAYFVQSGKANAWSATPKNPIPRKFAIRPQ 432


>At4g36520.1 68417.m05185 trichohyalin-related low similarity to
            SP|Q07283 Trichohyalin {Homo sapiens}
          Length = 1400

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/78 (23%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
 Frame = +3

Query: 261  QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFD-PTKLKHTETCEKNPLPTKDVIEQ 437
            Q+K  + +E+N    K+ +E  + + K    +E  +   +LK T   E+N    ++ IE 
Sbjct: 778  QIKERQEREENERRAKEVLEQAENERKLKEALEQKENERRLKETREKEENKKKLREAIEL 837

Query: 438  EKSAXXXXXXXXXANVSR 491
            E+           A + R
Sbjct: 838  EEKEKRLIEAFERAEIER 855


>At2g17410.1 68415.m02009 ARID/BRIGHT DNA-binding domain-containing
           protein contains Pfam profile PF01388: ARID/BRIGHT DNA
           binding domain
          Length = 786

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
 Frame = +1

Query: 52  TMACSVSDTPSLKDLPKVATDLKSQLEGF---NTSCLRDVDTNEKIVLPSAEDVATEKTQ 222
           T   S+ +  +  DLPK+  +  SQ E     + S    +DT E ++ P+AED   E   
Sbjct: 74  TSLASLEEVTNADDLPKIDDEKNSQFETSPHPSPSPSVALDTEEGLINPTAEDTVEENIV 133

Query: 223 KS 228
            S
Sbjct: 134 SS 135


>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam
           domain PF04931: DNA polymerase V
          Length = 1306

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +3

Query: 273 TETQEKNPLPDKDAIEAEKEKNKFLNGIENFD 368
           TE  E + LPD   ++ +K K + +N + N+D
Sbjct: 12  TELVENDNLPDSSIVKKKKSKTEKMNTVANYD 43


>At4g31820.1 68417.m04522 phototropic-responsive NPH3 family protein
           contains NPH3 family domain, Pfam:PF03000
          Length = 571

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 25/92 (27%), Positives = 42/92 (45%), Gaps = 10/92 (10%)
 Frame = +2

Query: 119 RVSSKASTPAVSVTSTPMKRLCFRLLKTSPLRRPRSLYSTVSRSLIEPAE-AHRDSGEEP 295
           +++++AST A      P+ R+  ++L    LR   S  ++V+ S   P E    + GEE 
Sbjct: 438 KLTNEASTHAAQNERLPL-RVVVQVLYFEQLRANHSPVASVAASSHSPVEKTEENKGEEA 496

Query: 296 AS---------GQRCYRSGEGKEQIPERHREL 364
                      G +  RSG G + +P R R +
Sbjct: 497 TKKVELSKKSRGSKSTRSGGGAQLMPSRSRRI 528


>At1g23230.1 68414.m02906 expressed protein
          Length = 1615

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 423 PLWGAGSSRTFPCASA*WDRSSRC-RSGICSFPSP 322
           PL+G   + + P  S  W+R+ RC R  I + PSP
Sbjct: 393 PLYGEDLAMSIPKGSLDWERAVRCIRHAIRTTPSP 427


>At5g60500.1 68418.m07587 undecaprenyl pyrophosphate synthetase
           family protein / UPP synthetase family protein contains
           putative undecaprenyl diphosphate synthase domain
           [PF01255]; similar to S. cerevisiae dehydrodolichyl
           diphosphate synthetase (DEDOL-PP
           synthase)(Rer2)[SP|P35196], a cis-prenyltransferase
          Length = 271

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -2

Query: 216 LLSGDVFSRRKHNLFIGVDVTETAGVEAFELTLQVCGDLG 97
           ++ G+    +KHNL IG+D    AG  + +  LQ C ++G
Sbjct: 41  IMDGNRRFAKKHNL-IGLDAGHRAGFISVKYILQYCKEIG 79


>At3g28770.1 68416.m03591 expressed protein 
          Length = 2081

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 20/66 (30%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 231 IRRYREV*SSQLKHTETQEKNPLPD-KDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKN 407
           +R   E      K +E  EK    + KDA   E + NK L+  EN D  K +  E  +++
Sbjct: 768 VRNKEENVQGNKKESEKVEKGEKKESKDAKSVETKDNKKLSSTENRDEAKERSGEDNKED 827

Query: 408 PLPTKD 425
              +KD
Sbjct: 828 KEESKD 833


>At3g19840.1 68416.m02513 FF domain-containing protein / WW
           domain-containing protein weak similarity to
           transcription factor CA150b [Mus musculus] GI:6329166;
           contains Pfam profiles PF01846: FF domain, PF00397: WW
           domain
          Length = 743

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/60 (26%), Positives = 26/60 (43%)
 Frame = +2

Query: 281 SGEEPASGQRCYRSGEGKEQIPERHRELRSH*AEAHGNVREEPAPHKGRH*AREISLNHY 460
           S E+ A   R   + + K  + ER   + SH ++   ++R EP      H  RE+    Y
Sbjct: 489 SAEQKAQEIRAAAASDFKTMLREREISINSHWSKVKDSLRNEPRYRSVAHEDREVFYYEY 548


>At1g51900.1 68414.m05850 hypothetical protein
          Length = 774

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 22/76 (28%), Positives = 36/76 (47%)
 Frame = +3

Query: 216 DPEVFIRRYREV*SSQLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTET 395
           DP+++IR Y E  +   K + T  +  + + D+IE    K + L+ I       LK +  
Sbjct: 362 DPDIYIRSYEESPNEVYKFSLTDLEEEIMENDSIEG--VKCRMLDEIMKKSGHHLKISRP 419

Query: 396 CEKNPLPTKDVIEQEK 443
            E  P   K V E+E+
Sbjct: 420 -EYKPEIEKQVYEEEE 434


>At5g11110.1 68418.m01297 sucrose-phosphate synthase, putative
           similar to sucrose-phosphate synthase isoform 1, Citrus
           unshiu, PIR:S72648
          Length = 894

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 20/53 (37%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
 Frame = +1

Query: 64  SVSDTPS--LKDLPKVATDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK 216
           S SD+PS  L+D+  ++ +LK  L+G  +     VDTN       AED A E+
Sbjct: 532 SDSDSPSDSLRDINDISLNLKLSLDGEKSGSNNGVDTN-----LDAEDRAAER 579


>At3g43390.1 68416.m04592 hypothetical protein similar to At3g24380,
           At5g36840, At5g35010, At3g42740, At4g05290, At2g14770,
           At2g05560, At4g08880, At1g34730, At1g27790, At1g34740,
           At1g27780, At5g36850, At3g42730, At1g52020, At3g24390,
           At4g05280, At1g25886, At4g03300
          Length = 1113

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 16/62 (25%), Positives = 27/62 (43%)
 Frame = +3

Query: 261 QLKHTETQEKNPLPDKDAIEAEKEKNKFLNGIENFDPTKLKHTETCEKNPLPTKDVIEQE 440
           QL+ T+ + K   P     E   +K K        D  K ++ E C   P+P + ++E  
Sbjct: 413 QLEETDVKRKRNAPGPSPKEPAMKKQK-----SEMDCDKEENAEDCFGEPVPERFIVEMR 467

Query: 441 KS 446
           +S
Sbjct: 468 RS 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,080,328
Number of Sequences: 28952
Number of extensions: 367675
Number of successful extensions: 1055
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1005
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1921616800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)