Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1409
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.08c |||conserved fungal protein|Schizosaccharomyces pomb...    29   0.68 
SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate syntha...    26   4.8  
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||...    26   6.4  
SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit Nse4|Sc...    26   6.4  

>SPCC895.08c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 490

 Score = 29.1 bits (62), Expect = 0.68
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
 Frame = -1

Query: 592 TPSCSGAASLPLARHFPGQCSL**VGMSLGSNKKIKIDFINSFSIL-EMHRC 440
           T S +G    P  R  P +C    +   LG+N K+K     +F I+  + RC
Sbjct: 46  TASFTGLKKFPTERQLPLECHFNHIDWDLGNNFKVKEGVFYTFDIIAPLPRC 97


>SPBC56F2.09c |arg5||arginine specific carbamoyl-phosphate synthase
           Arg5 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 415

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 379 RYLSPFPIQFCKVYFSK 429
           R+L PFP++F K ++SK
Sbjct: 3   RFLKPFPLRFGKRFYSK 19


>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 426

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +1

Query: 493 SCCFLNSYRPIKESTDLESVWQEEERPPQNNLA 591
           SC +L  Y+  K  T  +S W+   +   +NLA
Sbjct: 336 SCGYLKRYQKTKTKTRAKSTWKIANKSVYSNLA 368


>SPBC20F10.04c |nse4|rad62|Smc5-6 complex non-SMC subunit
           Nse4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 300

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -3

Query: 575 GGLSSSCQTLSRSVLSLIGRYEFRKQQEN*NR 480
           G L+S+C+    S+  ++G   FRK++ N  R
Sbjct: 119 GKLASNCEKQPASLNLMVGPLSFRKKERNIQR 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,513,050
Number of Sequences: 5004
Number of extensions: 44469
Number of successful extensions: 121
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)