Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1409
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1057 + 25733376-25735439                                         29   3.8  
07_03_0978 + 23099690-23100108,23100530-23100564,23100868-231009...    29   5.0  
10_07_0124 - 13085820-13085997,13086235-13086362,13086475-130865...    28   8.8  

>12_02_1057 + 25733376-25735439
          Length = 687

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = -3

Query: 641 VPPTSRPRSLAPALPSDAKLFWGGLSSSCQTLSRSVLSLIG 519
           +PP SRP S +PA PS      GGL +     + S L ++G
Sbjct: 260 LPPPSRPPSSSPAPPSPPPSVSGGLVAGSTVGAVSFLVVLG 300


>07_03_0978 +
           23099690-23100108,23100530-23100564,23100868-23100926,
           23101269-23101310,23102003-23102065,23102172-23102253,
           23102570-23102609,23102657-23102753
          Length = 278

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 22/71 (30%), Positives = 34/71 (47%)
 Frame = -3

Query: 722 FFPITLCWGVGLELIFSN*IGLWQSVLVPPTSRPRSLAPALPSDAKLFWGGLSSSCQTLS 543
           FF  T+CW  G+E        LW SVL+       S++  L     LF+G +S  C +L 
Sbjct: 161 FFLATMCWYQGIE--------LWTSVLI---RFKISISYLLALFVCLFFGYISRQCISLP 209

Query: 542 RSVLSLIGRYE 510
             V  L+ +++
Sbjct: 210 AMVKDLLTQFD 220


>10_07_0124 -
           13085820-13085997,13086235-13086362,13086475-13086550,
           13086726-13086803,13086985-13087064,13087411-13087480,
           13087730-13087887,13088225-13088315,13088379-13088455,
           13088612-13088686,13088798-13089071,13089911-13090041,
           13090154-13090323,13090413-13090971,13091077-13091127
          Length = 731

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 15/35 (42%), Positives = 19/35 (54%)
 Frame = -2

Query: 678 FFQLNRSLAVCSSSSHVTPKIPSSCSTERRQVVLG 574
           F+ L++  A  SSSS   P +PSS    RR  V G
Sbjct: 19  FYVLHKGGAAASSSSSSAPSLPSSGRARRRIDVSG 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,716,995
Number of Sequences: 37544
Number of extensions: 250204
Number of successful extensions: 605
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 605
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)