Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1409
(733 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38) 38 0.011
SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0) 37 0.019
SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05) 36 0.026
SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05) 35 0.059
SB_8406| Best HMM Match : UCR_UQCRX_QCR9 (HMM E-Value=3) 35 0.078
SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4) 34 0.14
SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.73
SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_56874| Best HMM Match : RVT_1 (HMM E-Value=4.5e-38)
Length = 492
Score = 37.5 bits (83), Expect = 0.011
Identities = 16/64 (25%), Positives = 33/64 (51%)
Frame = +2
Query: 515 TDLSKRALTWKVSXXXXXXXXXXXXXXSVEQELGILGVTWEELEQTAKDRFNWKKLIRAL 694
T++++++LTW ++ + +G TW +LE+ A++R W++L+ L
Sbjct: 424 TNITRQSLTWNPQGKRKRGRPRNTWRRDLDADAKQMGKTWGQLERLAQNRDAWRELVGGL 483
Query: 695 HPSR 706
P R
Sbjct: 484 CPRR 487
>SB_33808| Best HMM Match : Fibrinogen_C (HMM E-Value=0)
Length = 280
Score = 36.7 bits (81), Expect = 0.019
Identities = 15/37 (40%), Positives = 24/37 (64%)
Frame = +2
Query: 596 SVEQELGILGVTWEELEQTAKDRFNWKKLIRALHPSR 706
+++ EL +G+TW E + AKDR W+ + AL P+R
Sbjct: 239 TIQAELLEMGLTWGEALKVAKDRQEWRHRVAALFPTR 275
>SB_53071| Best HMM Match : TSP_1 (HMM E-Value=4.3e-05)
Length = 755
Score = 36.3 bits (80), Expect = 0.026
Identities = 16/29 (55%), Positives = 23/29 (79%)
Frame = +2
Query: 620 LGVTWEELEQTAKDRFNWKKLIRALHPSR 706
+G TWE+L++TAK+R +W KLI+AL R
Sbjct: 643 IGATWEDLKRTAKNRVSW-KLIQALCSGR 670
>SB_24663| Best HMM Match : Exo_endo_phos (HMM E-Value=6.7e-05)
Length = 666
Score = 35.1 bits (77), Expect = 0.059
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +2
Query: 596 SVEQELGILGVTWEELEQTAKDRFNWKKLIRALHPSR 706
+++ EL +G+TW + + AKDR W+ + AL P+R
Sbjct: 625 TIQAELLEMGLTWGKALKVAKDRQEWRHRVAALFPTR 661
>SB_8406| Best HMM Match : UCR_UQCRX_QCR9 (HMM E-Value=3)
Length = 342
Score = 34.7 bits (76), Expect = 0.078
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = +1
Query: 544 ESVWQEEERPPQNNLASLGRAGARDLGRDVGGTRTDCQRPI*LEKINSSPTPQQR 708
E W +E Q L R + G ++GG R + RP LEK N P ++R
Sbjct: 219 EYEWGKETCTTQEQLEERSRGRNKGAGMELGGVREESSRPCALEKANRRPMLRKR 273
>SB_29934| Best HMM Match : Vicilin_N (HMM E-Value=1.4)
Length = 290
Score = 33.9 bits (74), Expect = 0.14
Identities = 19/59 (32%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +2
Query: 533 ALTWKVSXXXXXXXXXXXXXXSVEQELGILGV-TWEELEQTAKDRFNWKKLIRALHPSR 706
ALTW +VE+E G G W+E+ A DR WK ++AL +R
Sbjct: 227 ALTWTPEGRRKQERPKTTWRRTVERERGEAGWRNWDEVRSKAADREKWKSTVKALCATR 285
>SB_20793| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 31.5 bits (68), Expect = 0.73
Identities = 18/59 (30%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = +2
Query: 533 ALTWKVSXXXXXXXXXXXXXXSVEQELGILGV-TWEELEQTAKDRFNWKKLIRALHPSR 706
ALTW +VE+E G G W+E+ DR WK ++AL +R
Sbjct: 193 ALTWTPEGRRKQGRPKTTWRRTVERERGEAGWRNWDEVRSKEADREKWKTTVKALCATR 251
>SB_41888| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1419
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = -2
Query: 657 LAVCSSSSHVTPKIPSSCSTERRQVVLGRPLFLLPDTFQVSALFDRSV*V*EATRKLKSI 478
+++CS + ++ S S +R LGR L L +T Q+ +L DR + +L S+
Sbjct: 135 ISLCSIVQSIIKEVTSRLSEVQRLTELGRELVDLSETGQLESLEDRLTRINNTWEELSSL 194
Query: 477 L 475
L
Sbjct: 195 L 195
>SB_9819| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 163
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = +2
Query: 521 LSKRALTWKVSXXXXXXXXXXXXXXSVEQELGILGVTWEELEQTAKDRFNWKKLIRALHP 700
+SK AL W ++ EL +T E + A+DR WK+ + AL P
Sbjct: 6 ISKVALRWTPPGRRKPGRPKTTWRRTILSELSKHQLTLAEAQHMARDRRKWKRFVAALCP 65
Query: 701 S 703
+
Sbjct: 66 T 66
>SB_48322| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 169
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +2
Query: 521 LSKRALTWKVSXXXXXXXXXXXXXXSVEQELGILGVTWEELEQTAKDRFNWKKLIRALHP 700
+ K AL W + ++ EL +T E + A+DR WK+ + AL P
Sbjct: 6 IPKVALRWTPTGRRKPGRPKTTWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCP 65
>SB_46530| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 129
Score = 28.7 bits (61), Expect = 5.1
Identities = 11/36 (30%), Positives = 22/36 (61%)
Frame = +2
Query: 596 SVEQELGILGVTWEELEQTAKDRFNWKKLIRALHPS 703
++ +L LG++W + A++R W++ I AL P+
Sbjct: 86 TIASKLKDLGLSWGHAQYLARNRREWRRTILALCPT 121
>SB_6981| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 71
Score = 28.7 bits (61), Expect = 5.1
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +2
Query: 521 LSKRALTWKVSXXXXXXXXXXXXXXSVEQELGILGVTWEELEQTAKDRFNWKKLIRALHP 700
+ K AL W + ++ EL +T E + A+DR WK+ + AL P
Sbjct: 6 IPKVALRWTPTGRRKPGRPKTTWRRTILSELSKHQLTLAEAQHKARDRRKWKRFVAALCP 65
>SB_22340| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 249
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = +2
Query: 521 LSKRALTWKVSXXXXXXXXXXXXXXSVEQELGILGVTWEELEQTAKDRFNWKKLIRALHP 700
+ K AL W ++ EL +T E + A+DR WK+ + AL P
Sbjct: 61 IPKVALRWTPPGRRKPGRPKTTWRRTILSELSGHQLTLAEAQHMARDRRKWKRFVAALCP 120
Query: 701 S 703
+
Sbjct: 121 T 121
>SB_13837| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 72
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/59 (27%), Positives = 24/59 (40%)
Frame = +2
Query: 527 KRALTWKVSXXXXXXXXXXXXXXSVEQELGILGVTWEELEQTAKDRFNWKKLIRALHPS 703
K AL W ++ EL +T E + A+DR WK+ + AL P+
Sbjct: 8 KVALRWTQPGRRKPGRPKTTWRRTILSELSEHQLTLAEAQHMARDRRKWKRFVAALCPT 66
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,464,946
Number of Sequences: 59808
Number of extensions: 301344
Number of successful extensions: 751
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1962001171
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -