Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1409
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion transpo...    28   5.9  
Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical pr...    28   7.8  

>Z81570-1|CAB04606.1|  749|Caenorhabditis elegans Hypothetical
           protein K12G11.1 protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 660 SLAVCSSSSHVTPKIPSSCSTERRQVVLG 574
           +L+  S SS   P IP+SCS  R  V +G
Sbjct: 411 ALSFASISSSFIPSIPNSCSLSRTLVAVG 439


>AY887910-1|AAX34422.1|  749|Caenorhabditis elegans anion
           transporter SULP-4 protein.
          Length = 749

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 660 SLAVCSSSSHVTPKIPSSCSTERRQVVLG 574
           +L+  S SS   P IP+SCS  R  V +G
Sbjct: 411 ALSFASISSSFIPSIPNSCSLSRTLVAVG 439


>Z68159-2|CAD89732.1|  354|Caenorhabditis elegans Hypothetical
           protein C33D9.3a protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 529 ESTDLESVWQEEERPPQNNLASLGRAGARDLGRDVGGTRTDCQR 660
           E+T   S  ++ +    + LAS  R  A +L R+V  T +DC++
Sbjct: 75  ETTSFSSTSRKSKSSKSSPLASPTRLVASELNRNVSKTYSDCEK 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,529,364
Number of Sequences: 27780
Number of extensions: 240204
Number of successful extensions: 577
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)