Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1409
         (733 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    24   1.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    22   6.8  

>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = +1

Query: 568 RPPQNNLASLGRAGARDLGRDVGGTRTDCQRPI*LEKINSSPTPQQRV 711
           RP  +  A+L  +G      ++     D Q+P+ L K + SP+P+  V
Sbjct: 843 RPASSTAATLVLSGCPSNMMELQVDIADSQQPLNLSKKSPSPSPRPLV 890


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 16/63 (25%), Positives = 26/63 (41%)
 Frame = +1

Query: 541  LESVWQEEERPPQNNLASLGRAGARDLGRDVGGTRTDCQRPI*LEKINSSPTPQQRVIGK 720
            ++ + +   R P   LA          G    G R   +RP  +  ++ SP+P  R  G+
Sbjct: 1329 IDQLCRNSRRTPVPRLAQDSSEDESYRGPSASGGRPVPERPERVPTVDLSPSPSDR--GR 1386

Query: 721  NYD 729
            N D
Sbjct: 1387 NDD 1389


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +1

Query: 394 FPIQFCKVYFSKFISSICAFLISKNYL*NRF*FSCCFLNSYRPIKESTDLESV 552
           +P+  C  YFS  I+ I   ++S  Y  N F    C  +   P    T L SV
Sbjct: 298 YPLTGCLYYFSTTINPILYNVMSAKYR-NAF-KETCRCSPSNPSITRTGLSSV 348


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,038
Number of Sequences: 438
Number of extensions: 2812
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22779405
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)