Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1409
         (733 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26510.1 68415.m03181 xanthine/uracil permease family protein...    29   3.2  
At5g18090.1 68418.m02124 transcriptional factor B3 family protei...    29   4.2  
At4g34260.1 68417.m04869 expressed protein                             28   5.6  
At1g76720.1 68414.m08929 eukaryotic translation initiation facto...    27   9.7  

>At2g26510.1 68415.m03181 xanthine/uracil permease family protein
           contains Pfam profile: PF00860 permease family
          Length = 551

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 21/64 (32%), Positives = 30/64 (46%)
 Frame = -2

Query: 732 IIIILSYYPLLGCRARINFFQLNRSLAVCSSSSHVTPKIPSSCSTERRQVVLGRPLFLLP 553
           I +IL  Y LL C A I  F     L V  + ++V+     SC T+R  ++   P   +P
Sbjct: 234 ISMILERYALLVCLAIIWAFAA--ILTVSGAYNNVSTATKQSCRTDRAFLMSSAPWIRIP 291

Query: 552 DTFQ 541
             FQ
Sbjct: 292 YPFQ 295


>At5g18090.1 68418.m02124 transcriptional factor B3 family protein
           contains Pfam profile PF02362: B3 DNA binding domain
          Length = 301

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +1

Query: 508 NSYRPIKESTDLESVWQEEERPPQNNLASLGR 603
           N Y+ +KE  D+ES W E   P      S GR
Sbjct: 140 NIYKDVKEEEDIES-WSESSYPGHKTAESTGR 170


>At4g34260.1 68417.m04869 expressed protein 
          Length = 843

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 12/54 (22%), Positives = 25/54 (46%)
 Frame = +1

Query: 505 LNSYRPIKESTDLESVWQEEERPPQNNLASLGRAGARDLGRDVGGTRTDCQRPI 666
           ++S RP  +  +L+ +W  + +PP +    L      +    + G   +CQ P+
Sbjct: 402 ISSSRPGTQVANLQGIWNRDIQPPWDGAPHLNINLQMNYWHSLPGNIRECQEPL 455


>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to
           SP|O60841 Translation initiation factor IF-2 {Homo
           sapiens}; contains Pfam profiles PF00009: Elongation
           factor Tu GTP binding domain, PF03144: Elongation factor
           Tu domain 2
          Length = 1201

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 502 FLNSYRPIKESTDLESVWQEEERPPQ-NNLASLGRAGARD 618
           + N  +P ++  +  SV  E+E  PQ N+ A+LG  G+ D
Sbjct: 475 YANKKKPSRQKGNDTSVQVEDEVEPQENHAATLGEVGSED 514


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,504,161
Number of Sequences: 28952
Number of extensions: 216912
Number of successful extensions: 573
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1604469728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)