Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1408
         (751 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9LND3 Cluster: T21E18.20 protein; n=10; core eudicotyl...    34   3.3  
UniRef50_A0BQG4 Cluster: Chromosome undetermined scaffold_120, w...    34   3.3  
UniRef50_Q8SXK7 Cluster: RE11615p; n=2; Sophophora|Rep: RE11615p...    33   9.9  

>UniRef50_Q9LND3 Cluster: T21E18.20 protein; n=10; core
            eudicotyledons|Rep: T21E18.20 protein - Arabidopsis
            thaliana (Mouse-ear cress)
          Length = 1322

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -3

Query: 194  GFILHIFVFVSLTCRFFRCIRFEITTILKKFSLQKKNYFCYQSITD 57
            GF+L +++  +L   + +C   E   +L  F+L KKN FC+ SI +
Sbjct: 1062 GFVLDVYIGSALVDMYSKCGSLE-RALLVFFNLPKKNLFCWNSIIE 1106


>UniRef50_A0BQG4 Cluster: Chromosome undetermined scaffold_120,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_120,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 1348

 Score = 34.3 bits (75), Expect = 3.3
 Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 6/100 (6%)
 Frame = -3

Query: 293 KIHYKSFHTHVSIKNLTDGAVLNSMYISVSF--FAGFILHIFVFVSLTCRFFRCIRFEI- 123
           ++   SFH H  I+   +G  +   Y+S+    ++G I   F F       F    ++  
Sbjct: 266 EVDLNSFH-HYQIEKKQNGQEITQNYLSIQLKPYSGLITVYFNFKQELPLSFEDYEYKYK 324

Query: 122 ---TTILKKFSLQKKNYFCYQSITDITFNSKDQSYQPIVM 12
              T+I++   L  KNY   +SI  I F ++  SYQ IV+
Sbjct: 325 INQTSIIQFSDLDLKNYMQIKSIDIIIFGNELSSYQFIVI 364


>UniRef50_Q8SXK7 Cluster: RE11615p; n=2; Sophophora|Rep: RE11615p -
           Drosophila melanogaster (Fruit fly)
          Length = 304

 Score = 32.7 bits (71), Expect = 9.9
 Identities = 12/51 (23%), Positives = 31/51 (60%)
 Frame = -1

Query: 307 YNPELKFTTRAFIHTLVLKISQMALY*IVCIFLSHSLLASSYTFLYLCLLP 155
           Y+ +L  T +A +H+ V ++  + +  +  + L++ L + +Y + ++CL+P
Sbjct: 229 YSLKLDQTLKALVHSSVWELKNVVIIAVHWMLLAYGLTSLNYHYAFMCLVP 279


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 681,854,179
Number of Sequences: 1657284
Number of extensions: 13227695
Number of successful extensions: 29042
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 27626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29024
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 61734884250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)