Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1408
         (751 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    25   0.85 
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    25   0.85 
AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    24   1.5  
AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory recept...    23   3.4  
AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450 ...    22   4.6  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    22   4.6  

>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 723 KKKQHTNRII-LKFNLHYSLYVSPFR*CKKYNTK 625
           K +Q   +I+  K+N   ++ +  FR CKK+ TK
Sbjct: 10  KSRQKAPKIVNSKYNSILNIALKNFRLCKKHKTK 43


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 24.6 bits (51), Expect = 0.85
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
 Frame = -2

Query: 723 KKKQHTNRII-LKFNLHYSLYVSPFR*CKKYNTK 625
           K +Q   +I+  K+N   ++ +  FR CKK+ TK
Sbjct: 10  KSRQKAPKIVNSKYNSILNIALKNFRLCKKHKTK 43


>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/47 (21%), Positives = 22/47 (46%)
 Frame = -3

Query: 224 SMYISVSFFAGFILHIFVFVSLTCRFFRCIRFEITTILKKFSLQKKN 84
           ++++  + +     HIF F ++ C F   I   I  + +K  +  K+
Sbjct: 59  TLHVCFNSYMYAFTHIFFFFAICCDFIALIVVNIVHVFRKRRVNYKD 105


>AM292361-1|CAL23173.2|  373|Tribolium castaneum gustatory receptor
           candidate 40 protein.
          Length = 373

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 397 ILNVLSICKILSLVNNCKVAPS 332
           I++  ++  ILS+VN C   PS
Sbjct: 319 IMSAAAVEHILSIVNTCSQIPS 340


>AY920544-1|AAX62142.1|  463|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 463

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 284 YKSFHTHVSIKNLTDGAVLN 225
           + SFH HVS+ N     +L+
Sbjct: 54  FDSFHDHVSVSNTNTEPLLS 73


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 9    FHYNRLVRLIFGIKCYVCN*LITKIV 86
            F+YN +  L F + C+ C   I  IV
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQLIV 972


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 9    FHYNRLVRLIFGIKCYVCN*LITKIV 86
            F+YN +  L F + C+ C   I  IV
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQLIV 972


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 9    FHYNRLVRLIFGIKCYVCN*LITKIV 86
            F+YN +  L F + C+ C   I  IV
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQLIV 972


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +3

Query: 9    FHYNRLVRLIFGIKCYVCN*LITKIV 86
            F+YN +  L F + C+ C   I  IV
Sbjct: 947  FYYNIIPILFFMLVCFTCKSNIQLIV 972


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,476
Number of Sequences: 336
Number of extensions: 4349
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)