Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1408
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    29   0.94 
SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|...    27   3.8  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   5.0  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    26   5.0  
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    26   5.0  
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...    25   8.7  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    25   8.7  

>SPCC330.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 90

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
 Frame = -3

Query: 656 RSDNVKNIILRFSTFYLYLNAFFNCVPISHL*LFM--CVYENVVYVRNCDVTIS 501
           RS  ++ + +R + F L LN   N +P+  L  F   C+Y    ++ +C++  S
Sbjct: 12  RSRKLELLSIRINIFGLQLNIIINLIPLVLLFAFFCPCIYFLHTFLADCEIAKS 65


>SPAC17G6.17 |pof8||F-box protein Pof8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 20/79 (25%), Positives = 38/79 (48%)
 Frame = -3

Query: 722 KKNNTQTGLF*NLIYITHCMFHRSDNVKNIILRFSTFYLYLNAFFNCVPISHL*LFMCVY 543
           + N TQ  L   L Y+T+ +FH  DN  ++++R     L L+     +P+         Y
Sbjct: 107 RPNPTQNNLKYALSYVTNALFH-FDNSSHMVIRNENIVLPLD-----IPL---------Y 151

Query: 542 ENVVYVRNCDVTISDDRIV 486
           + ++YV     T+S+  ++
Sbjct: 152 DRIIYVEPVPATLSNKSLL 170


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 689 NLIYITHCMFHRSDNVKNIILRFSTFYL 606
           +L Y+   + HR   V+N++L F+TF L
Sbjct: 151 SLHYLRPPLIHRDLKVENVLLSFNTFKL 178


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = +3

Query: 231 YSAICEIFNTNVCMKALVVNFNSGLYVKLKYQF--TEGATLQLFTNDKI 371
           Y +I E+F T++CM+      N  LY KL  Q   T    LQ   + +I
Sbjct: 126 YCSIAELFMTDLCMQP-DAEENCELYTKLALQIDATNAEALQTLASMRI 173


>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +2

Query: 398 NCILILEGFTSTSCELHTCNFFSYNASSKSL 490
           NC+ + E      C   +C  +S+NA  ++L
Sbjct: 103 NCLCVNENLVVCGCSNSSCIVYSWNAEQRNL 133


>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 130 NRMQRKKRQVRDTNTKMCRMKPAKNETEI 216
           + ++RKK Q  +   K  R KP KN+ +I
Sbjct: 4   SELKRKKHQSGNEEVKEKRQKPLKNDKKI 32


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = +1

Query: 154 QVRDTNTKM--CRMKPAKNETEIYILFN 231
           Q+R TN K+  C++   K+E E Y LF+
Sbjct: 98  QLRLTNMKLWNCKLPSLKDEAEFYSLFS 125


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,085,735
Number of Sequences: 5004
Number of extensions: 64467
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)