Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1408
         (751 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY089582-1|AAL90320.1|  304|Drosophila melanogaster RE11615p pro...    33   0.55 
AE014297-4808|AAF57197.2|  304|Drosophila melanogaster CG2126-PA...    33   0.55 
AE014134-2558|AAZ66469.1|  173|Drosophila melanogaster CG33679-P...    29   5.1  

>AY089582-1|AAL90320.1|  304|Drosophila melanogaster RE11615p
           protein.
          Length = 304

 Score = 32.7 bits (71), Expect = 0.55
 Identities = 12/51 (23%), Positives = 31/51 (60%)
 Frame = -1

Query: 307 YNPELKFTTRAFIHTLVLKISQMALY*IVCIFLSHSLLASSYTFLYLCLLP 155
           Y+ +L  T +A +H+ V ++  + +  +  + L++ L + +Y + ++CL+P
Sbjct: 229 YSLKLDQTLKALVHSSVWELKNVVIIAVHWMLLAYGLTSLNYHYAFMCLVP 279


>AE014297-4808|AAF57197.2|  304|Drosophila melanogaster CG2126-PA
           protein.
          Length = 304

 Score = 32.7 bits (71), Expect = 0.55
 Identities = 12/51 (23%), Positives = 31/51 (60%)
 Frame = -1

Query: 307 YNPELKFTTRAFIHTLVLKISQMALY*IVCIFLSHSLLASSYTFLYLCLLP 155
           Y+ +L  T +A +H+ V ++  + +  +  + L++ L + +Y + ++CL+P
Sbjct: 229 YSLKLDQTLKALVHSSVWELKNVVIIAVHWMLLAYGLTSLNYHYAFMCLVP 279


>AE014134-2558|AAZ66469.1|  173|Drosophila melanogaster CG33679-PA
           protein.
          Length = 173

 Score = 29.5 bits (63), Expect = 5.1
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 626 RFSTFYLYLNAFFNCVPISHL*LFMCVYENVVYVRNCDVTISDDRI 489
           R   FY +  AF     I+H     C Y + +Y+RNC +   DDR+
Sbjct: 98  RLRVFYYFYTAFMPFSNINHT----CPYNDDIYIRNCTL---DDRM 136


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 30,822,181
Number of Sequences: 53049
Number of extensions: 615949
Number of successful extensions: 1302
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1268
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1302
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3417159966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)